BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4330.p (484 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1238 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 227 5e-59 PA2837 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 214 3e-55 PA2495 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 203 8e-52 PA4208 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 199 2e-50 PA3521 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 185 2e-46 >PA1238 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 482 Score = 227 bits (579), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 187/470 (39%), Positives = 267/470 (56%), Gaps = 14/470 (2%) Query: 22 RRVALIV-IVTAIANTGCASGPDYHLPASPRVAVGTFVSKPANTDTAAPLPAHWWKLYND 80 R VAL + I TA+ GCA + + PA ++ +S+ A T A LPA WW LY D Sbjct: 8 RCVALALGISTAL---GCA---NRNQPAPRAESLDPGLSRVAGTRGDA-LPAQWWTLYQD 60 Query: 81 PALDQLVQEALTANTNLRVTLANLDRARAVYKEARGGLYPSSNLSISPSYGRD---QTTW 137 P L+ LV AL N +L A+ + A+G +P + + YGRD QT Sbjct: 61 PGLNHLVAAALRHNRDLAAADAHARALLGHLRGAQGERWPRTEVGYGYQYGRDGDDQTLA 120 Query: 138 TGTGQ-APTQLSYNGGIDISYEVDLFGRVKRDIEAARDDTEAVAAAHDAAKVVVVADTTK 196 T + +Q + +D+SY++DL+G V+ I AA+ D EA AA D +V V + TT Sbjct: 121 EATDEDLHSQWKHTVRLDLSYQLDLWGEVRARIAAAKADAEAAQAARDLLRVSVASQTTL 180 Query: 197 AYLDACTYGESIEVAQSSIELAQRSLDLIRRQEHAGAASLLDVERAGVTLAQAQAALPPL 256 AY+ AC EV + S+ L SL L RQ AG +S L R + +AALP L Sbjct: 181 AYVRACALARRAEVQRRSVGLLDASLALSERQLAAGLSSELQRRRLLALRERTRAALPML 240 Query: 257 QNQKEAALFELAALLGRTPSQVPTSARACTKAPEVAGALPIGEGTALLRRRPDLRQAERQ 316 + ++ AAL+ELA L GR+P Q+ A C P++ ALP G+G +LL RRPD+R AER+ Sbjct: 241 EARRRAALYELALLSGRSPRQLDAPAATCAGIPQLRRALPTGDGWSLLARRPDVRAAERR 300 Query: 317 LAADTARIGVAVADLYPRVTL--GASASYLRNDFLNGNRTWSFSLGPLISWSFPNTMVVR 374 LAA AR +A A+LYPR++ GA S L G+ +++ GPL+SW FPN R Sbjct: 301 LAAADARRALAEAELYPRISFAVGAETSAATLAGLGGSGALAYAAGPLLSWRFPNRESAR 360 Query: 375 SRIVQAKAQAAASLASFDGVVLNALKESEQSLSAYGAAMQQRQALIQARDRADKAFQLAG 434 R+ A A+ A+LA FDG VL AL+E E++L+ Y Q+R L +A D A++LA Sbjct: 361 GRLDSAAAERDAALARFDGAVLGALREVERALALYAGERQRRADLQRALDEQRHAYRLAR 420 Query: 435 QRYRAGSISYLDVIVAQSSLVDARSQVAAADQRLNSAQVSVFKALGGGWE 484 YRAG++ L+++ +Q SLV R+++ A+ R+ QV +F+ALGGGW+ Sbjct: 421 SNYRAGALDALELLDSQRSLVADRARLVDAEMRVAERQVELFRALGGGWQ 470 >PA2837 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 479 Score = 214 bits (546), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 147/468 (31%), Positives = 249/468 (53%), Gaps = 14/468 (2%) Query: 27 IVIVTAIANTGCASGPDYHLPASPRVAVGTFVSKPANTD--TAAPLPAHWWKLYNDPALD 84 ++++ ++A C+ GPD+ P P + + N AAPL A WW L++D L+ Sbjct: 6 LLLIASLALGACSLGPDFTRPDRPAPGEWSLQAAAGNPSHLAAAPLAAQWWTLFDDAQLN 65 Query: 85 QLVQEALTANTNLRVTLANLDRARAVYKEARGGLYPSSNLSISPSYGRDQTTWTG----T 140 L+Q AN +LR A L ++RA+ + G PS + S +Y R +TT G + Sbjct: 66 ALLQRVQRANLDLRSAAARLQQSRAIRRSLGGDALPS--VDASGNYQRQRTTSAGLFDPS 123 Query: 141 GQAPTQLSYN---GGIDISYEVDLFGRVKRDIEAARDDTEAVAAAHDAAKVVVVADTTKA 197 G+A + +YN G D S+E+D +GRV+R++EAA EA +V V+A+ + Sbjct: 124 GKA-GKGNYNHALAGFDASWELDFWGRVRRELEAADATVEASENELRDVQVSVLAEAARD 182 Query: 198 YLDACTYGESIEVAQSSIELAQRSLDLIRRQEHAGAASLLDVERAGVTLAQAQAALPPLQ 257 Y+ + + ++E A+RSL+L R + G A+ L+V +A +A +A LP ++ Sbjct: 183 YIQLRGEQNRAAIIRDNLETARRSLELTRTRLANGVATDLEVAQALAQVASMEARLPEVE 242 Query: 258 NQKEAALFELAALLGRTPSQVPTSARACTKAPEVAGALPIGEGTALLRRRPDLRQAERQL 317 + + L L+G +P + P G++P+G + L +RRPD+R+AE +L Sbjct: 243 KNQAHLVNALGYLVGASPGSLLAELGPARAIPRPPGSVPVGLPSELAQRRPDIRRAEARL 302 Query: 318 AADTARIGVAVADLYPRVTLGASASY--LRNDFLNGNRTWSFSLGPLISWSFPNTMVVRS 375 A TA IGVA AD YPR+TL + + L+ L F++GP S +R Sbjct: 303 HAATASIGVAKADFYPRITLNGNFGFESLQLSSLGDWDHRQFAIGPAFSLPIFEGGRLRG 362 Query: 376 RIVQAKAQAAASLASFDGVVLNALKESEQSLSAYGAAMQQRQALIQARDRADKAFQLAGQ 435 R+ +AQ + + VL A +E + ++ Y A ++++ L +A + +A Q A + Sbjct: 363 RLELREAQQQEAAIDYQRTVLRAWQEVDDAMHDYAANQRRQERLGEAVAQNRRALQSARE 422 Query: 436 RYRAGSISYLDVIVAQSSLVDARSQVAAADQRLNSAQVSVFKALGGGW 483 +YRAG++ +L V+ +Q L+D + Q A+D+ ++ V+++KALGGGW Sbjct: 423 QYRAGAVDFLSVLDSQRQLLDNQEQQVASDEAVSLTLVNLYKALGGGW 470 >PA2495 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 472 Score = 203 bits (516), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 160/460 (34%), Positives = 252/460 (54%), Gaps = 11/460 (2%) Query: 29 IVTAIANTGCASGPDYHLPASPRVAVGTFVSKPANTDTAAPLPAHWWKLYNDPALDQLVQ 88 + + +A + C GPDY P + + SKP + L WWK ++DP L+QLV+ Sbjct: 17 LFSLLALSACTVGPDYRTPDTAAAKIDATASKPYDRSRFESL---WWKQFDDPTLNQLVE 73 Query: 89 EALTANTNLRVTLANLDRARAVYKEARGGLYPSSNLSISPSYGRDQTTWTGTGQAPTQLS 148 ++L+ N +LRV A L ARA+ + +P S G+ Q + ++ Sbjct: 74 QSLSGNRDLRVAFARLRAARALRDDVANDRFPVVTSRASADIGKGQQPGVTEDRVNSE-R 132 Query: 149 YNGGIDISYEVDLFGRVKRDIEAARDDTEAVAAAHDAAKVVVVADTTKAY--LDACTYGE 206 Y+ G+D ++E+DLFGR++R +E++ +EA A +V ++A+ AY L E Sbjct: 133 YDLGLDSAWELDLFGRIRRQLESSDALSEAAEADLQQLQVSLIAELVDAYGQLRGAQLRE 192 Query: 207 SIEVAQSSIELAQRSLDLIRRQEHAGAASLLDVERAGVTLAQAQAALPPLQNQKEAALFE 266 I A S++E + S L + AG + LDV RA LA A++P LQ + E A Sbjct: 193 KI--ALSNLENQKESRQLTEQLRDAGVGAELDVLRADARLAATAASVPQLQAEAERARHR 250 Query: 267 LAALLGRTPSQVPTSARACTKAPEVAGALPIGEGTALLRRRPDLRQAERQLAADTARIGV 326 +A LLG+ P ++ T + P + ALPIG+ LLRRRPD+R AER+LAA TA +GV Sbjct: 251 IATLLGQRPEEL-TVDLSPRDLPAITKALPIGDPGELLRRRPDIRAAERRLAASTADVGV 309 Query: 327 AVADLYPRVTLGASASYL--RNDFLNGNRTWSFSLGPLISWSFPNTMVVRSRIVQAKAQA 384 A ADL+PRV+L + R + + ++S+GP ISW+ + VR+R+ AKA A Sbjct: 310 ATADLFPRVSLSGFLGFTAGRGSQIGSSAARAWSVGPSISWAAFDLGSVRARLRGAKADA 369 Query: 385 AASLASFDGVVLNALKESEQSLSAYGAAMQQRQALIQARDRADKAFQLAGQRYRAGSISY 444 A+LAS++ VL AL+ES + S YG ++ +L++ + + A Q A RYR G+ + Sbjct: 370 DAALASYEQQVLLALEESANAFSDYGKRQERLVSLVRQSEASRAAAQQAAIRYREGTTDF 429 Query: 445 LDVIVAQSSLVDARSQVAAADQRLNSAQVSVFKALGGGWE 484 L ++ A+ + A A A+ L V+++++LGGGW+ Sbjct: 430 LVLLDAEREQLSAEDAQAQAEVELYRGIVAIYRSLGGGWQ 469 >PA4208 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 487 Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 156/475 (32%), Positives = 242/475 (50%), Gaps = 24/475 (5%) Query: 18 PFISRRVALIVIVTAIANTGCASGPDYHLPASP--RVA---VGTFVSKPANTDTAAPLPA 72 P +SR + + T +A C+ GPDY P SP RVA +G F + A Sbjct: 6 PNLSRLALALAVGTGLA--ACSVGPDYQRPQSPPPRVASEHLGEFSGERRE--------A 55 Query: 73 HWWKLYNDPALDQLVQEALTANTNLRVTLANLDRARAVYKEARGGLYPSSNLSISPSYGR 132 WW ++DP L +LV +AL N ++R ANL ARA++ + P ++ Y R Sbjct: 56 PWWSFFDDPQLVRLVDQALARNHDIREARANLRSARALFDDRWLDQLP--QVTSQAGYSR 113 Query: 133 ---DQTTWTGTGQAPTQLSYNGGIDISYEVDLFGRVKRDIEAARDDTEAVAAAHDAAKVV 189 Q + G + SY G D +E+DLFGR+ R +AA EA A ++ Sbjct: 114 SIEQQLDYDGEPRRRLAESYRAGFDAQWEIDLFGRLGRLSDAALARAEAADADLRLVRLS 173 Query: 190 VVADTTKAYLDACTYGESIEVAQSSIELAQRSLDLIRRQEHAGAASLLDVERAGVTLAQA 249 + ADT +AY + Y ++VA++ + + +L+L R G+ DVE A L ++ Sbjct: 174 IAADTARAYFEIQGYQRRLDVARAQVRSWRDTLELTRSSLQLGSGLPEDVENAQANLLRS 233 Query: 250 QAALPPLQNQKEAALFELAALLGRTPSQVPTSARACTKAPEVAGALPIGEGTALLRRRPD 309 +AA+PPL E+A + L L G P AP +A LP+G+ L+ +RPD Sbjct: 234 EAAIPPLTTALESARYRLDVLRGEAPGSGAPILDGGAAAP-LAKNLPLGDVDRLILQRPD 292 Query: 310 LRQAERQLAADTARIGVAVADLYPRVTLGASASY--LRNDFLNGNRTWSFSLGPLISWSF 367 + AERQLAA T +G A A+LYPR+ LG + LR+ L G+ + +F L P +SW Sbjct: 293 VVSAERQLAASTEDVGAATAELYPRLDLGGFIGFFALRSGDL-GSASRAFELAPSVSWPA 351 Query: 368 PNTMVVRSRIVQAKAQAAASLASFDGVVLNALKESEQSLSAYGAAMQQRQALIQARDRAD 427 VR+R+ +AQ+ A+LA + +L A ++ +L+ ++ AL Q+ Sbjct: 352 FRLGNVRARLRAVEAQSDAALARYQRSLLLAQEDVGNALNQLAEHQRRLVALFQSATHGA 411 Query: 428 KAFQLAGQRYRAGSISYLDVIVAQSSLVDARSQVAAADQRLNSAQVSVFKALGGG 482 A ++A +RYRAG+ SYL V+ Q +L R ++A A+ ++++KALG G Sbjct: 412 NALEIANERYRAGAGSYLAVLENQRALYQIREELAQAETASFVNVIALYKALGWG 466 >PA3521 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 491 Score = 185 bits (469), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 159/459 (34%), Positives = 239/459 (52%), Gaps = 22/459 (4%) Query: 37 GCAS-GPDYHLPASPRVAVGTFVSKPANTDTAAPLPAHWWKLYNDPALDQLVQEALTANT 95 GCA+ GPDY P++ A +F + PA D + + WW+ +++PAL+ L+Q AL AN Sbjct: 17 GCAAVGPDYAPPSA--SAPASFGAMPAGIDGSG-VEIEWWRGFDEPALESLIQRALAANL 73 Query: 96 NLRVTLANLDRARAVYKEARGGLYPSSNLSISPSYGRDQTTWTGTGQAPTQLSYNGGIDI 155 ++ + A LD A+A+ +E R P + R T GQ +Y G +D Sbjct: 74 DIALAGARLDEAKALLRENREEFLPRGGPAFDYQARRRGEVETPAGQQRDIETYRGALDA 133 Query: 156 SYEVDLFGRVKRDIEAARDDTEAVAAAHDA----AKVVVVADTTKAYLDACTYGESIEVA 211 S+E+DLFGRV+R +EAA EA A + +A + V A ++ + V Sbjct: 134 SWEIDLFGRVRRSVEAA----EAQAGSREALLRNVQASVAATVAMSWFQLQGIEAELAVV 189 Query: 212 QSSIELAQRSLDLIRRQEHAGAASLLDVERAGVTLAQAQAALPPLQNQKEAALFELAALL 271 + SL+++ R AG+A D RA L +AA+P L+ ++ A LA LL Sbjct: 190 HDIAGNQRDSLEMVERLVSAGSAHEFDRLRAEALLHNVEAAVPDLERRRAATRNALAVLL 249 Query: 272 GRTPSQV-PTSARACTKAPEVAGALPIGEGTALLRRRPDLRQAERQLAADTARIGVAVAD 330 P P ARA + + L +G+ LL RR D+ AER LAA TARIGV A Sbjct: 250 AEAPQAFSPPVARASGERLTLR-TLGVGDPAGLLARRADIAAAERNLAAATARIGVETAG 308 Query: 331 LYPRVTLGASASYLRN--DFLNGNRTWSFSLGPLISWSFPNTMVVRSRIVQAKAQAAASL 388 LYP+V + S + D L+ + T L P+I W+ + V +RI ++A+A +L Sbjct: 309 LYPQVEVRGSIGLVAGNLDALDESGTSFNVLNPVIRWALLDRGRVWARIAASEARAQEAL 368 Query: 389 ASFDGVVLNALKESEQSLSAYGAAMQQ-RQALIQARDRADKAFQLAGQRYRAGSISYLDV 447 +D VL AL+E++ + + YGAA + R L++A + A +LA +R+ G YLDV Sbjct: 369 ILYDRTVLRALQETDDAFNGYGAAADRLRLRLLEATANREAA-RLARERFVQGDGEYLDV 427 Query: 448 IVAQSSLVDARS--QVAAADQRLNSAQVSVFKALGGGWE 484 + A+ S +R +A +QRL A V ++KALGGGWE Sbjct: 428 LEAERSDYLSRRALSIARTEQRL--AVVGIYKALGGGWE 464