BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4329.p         (240 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PM0352 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins Pmu Past...    47   4e-05
Cj0322 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins Cje Camp...    46   7e-05
NMB0205 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins Nme Nei...    45   1e-04
NMA0064 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins NmA Nei...    45   1e-04
VC2106 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins Vch Vibr...    44   2e-04

>PM0352 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins Pmu Pasteurella
           multocida
          Length = 146

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 4/135 (2%)

Query: 101 LETNGLRPTNARAGVLSTLEKAAPSCLDASQIYLLLSTQFDSLAQGSVYRALNDLWAAGL 160
           L+  GL+ T  R  +L+ +++       A  +Y +L  + + +   +VYR LN    A +
Sbjct: 9   LKKAGLKITEPRLTILALMQEHQEEHFSAEDVYKMLLERGEEIGLATVYRVLNQFDEAKI 68

Query: 161 LVRTAGARGRAFYAIKPETPEHQYVTLRCHCGARLVFIEDLAFRKRLQLLVFQEGFVPDT 220
           L+R      ++ + + P T  H ++     CG    F +D+   KR + +  Q G    T
Sbjct: 69  LIRHNFEGNKSVFELAP-TEHHDHIIC-VDCGKVFEFNDDI-IEKRQREITKQHGIELAT 125

Query: 221 EPVFIITTTCSKCRK 235
             ++ +   CS  +K
Sbjct: 126 HSLY-LYGKCSNVKK 139


>Cj0322 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins Cje Campylobacter
           jejuni
          Length = 136

 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 16/142 (11%)

Query: 99  QRLETNGLRPTNARAGVLSTLEKAAPSCLDASQIYLLLSTQFDSLAQGSVYRALNDLWAA 158
           Q L+ + L+ T  R  VL  L++     +D  ++Y+ +  ++ S++  +VY+ LN L   
Sbjct: 5   QMLKKHELKATPQRLCVLKILKRHEHPNID--ELYIEIKKEYPSISLATVYKNLNTLQEQ 62

Query: 159 GLLVRTAGARGRAFYAIKPETPEHQYVTLRCHCGARLVFIEDLAFRKRLQLLVFQE---- 214
           GL+V       +  Y I  E  EH +V     CG     IEDL+F K  +L  +QE    
Sbjct: 63  GLVVEINVLNQKTCYDIYEE--EHIHVVCT-KCGG----IEDLSF-KDAKLYEYQEHLEK 114

Query: 215 --GFVPDTEPVFIITTTCSKCR 234
             G + +   V      C KC 
Sbjct: 115 KIGNLVNHLSVCAYVDNCKKCH 136


>NMB0205 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins Nme Neisseria
           meningitidis MC58
          Length = 144

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 40/90 (44%)

Query: 100 RLETNGLRPTNARAGVLSTLEKAAPSCLDASQIYLLLSTQFDSLAQGSVYRALNDLWAAG 159
           +L+ +GL+ T  R  +L   E  A   L A  +Y +L  +   +   ++YR L     AG
Sbjct: 9   QLKDSGLKVTGPRLKILDLFETHAEEHLSAEDVYRILLEEGVEIGVATIYRVLTQFEQAG 68

Query: 160 LLVRTAGARGRAFYAIKPETPEHQYVTLRC 189
           +L R     G+A Y +         V ++C
Sbjct: 69  ILQRHHFETGKAVYELDKGDHHDHIVCVKC 98


>NMA0064 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins NmA Neisseria
           meningitidis Z2491
          Length = 144

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 40/90 (44%)

Query: 100 RLETNGLRPTNARAGVLSTLEKAAPSCLDASQIYLLLSTQFDSLAQGSVYRALNDLWAAG 159
           +L+ +GL+ T  R  +L   E  A   L A  +Y +L  +   +   ++YR L     AG
Sbjct: 9   QLKDSGLKVTGPRLKILDLFETHAEEHLSAEDVYRILLEEGVEIGVATIYRVLTQFEQAG 68

Query: 160 LLVRTAGARGRAFYAIKPETPEHQYVTLRC 189
           +L R     G+A Y +         V ++C
Sbjct: 69  ILQRHHFETGKAVYELDKGDHHDHIVCVKC 98


>VC2106 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins Vch Vibrio
           cholerae
          Length = 150

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 4/116 (3%)

Query: 95  SSQQQRLETNGLRPTNARAGVLSTLEKAAPSCLDASQIYLLLSTQFDSLAQGSVYRALND 154
           S   Q L+  GL+ T  R  +L  L++     + A ++Y  L    + +   +VYR LN 
Sbjct: 2   SDNNQALKDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQ 61

Query: 155 LWAAGLLVRTAGARGRAFYAIKPETPEHQYVTLRC-HCGARLVFIEDLAFRKRLQL 209
              AG++ R     G++ + +   + +H +  L C  CG  + F +D+  +++ ++
Sbjct: 62  FDDAGIVTRHHFEGGKSVFEL---STQHHHDHLVCLDCGEVIEFSDDVIEQRQKEI 114