BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4303.p         (219 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L169390 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A s...    33   0.35 
SPy0902 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A s...    33   0.36 
MA4081 [H] COG1232 Protoporphyrinogen oxidase Mac Methanosarcina...    32   1.1  
SP1402_2 [S] COG3270 Uncharacterized conserved protein Spn Strep...    32   1.2  
ML1942 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Mle ...    31   1.9  

>L169390 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and
           related amidases Lla Lactococcus lactis
          Length = 499

 Score = 33.5 bits (75), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 11/96 (11%)

Query: 47  MAEASNGGGSTRYRADDTAMIGCKQS------GAEWY--WRAAHTESSLTANIFTSQLF- 97
           +A AS+GGGS R  A  + +IG K +      G + Y  W+ A    +LT ++  +  F 
Sbjct: 161 IAGASDGGGSIRIPASFSGLIGLKMTRGRMPQGPDSYRGWQGASISGALTVSVRDTARFV 220

Query: 98  --LQQFSAPAPAAHEVIPLGAMNALMFNLGQSLGTN 131
             +Q     AP   +++    + AL  + GQ++  N
Sbjct: 221 LEMQTLQEAAPYQAKLLDEKELIALTKSTGQAVSNN 256


>SPy0902 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and
           related amidases Spy Streptococcus pyogenes M1 GAS
          Length = 484

 Score = 33.5 bits (75), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 13/79 (16%)

Query: 43  GFAHMAEASNGGGSTRYRADDTAMIGCKQS--------GAEWYWRAAHTESSLTANIFTS 94
           G + +A AS+GGGS R  A    +IG K S        G+   W+ A    +LT ++  +
Sbjct: 158 GISALATASDGGGSIRIPASFNGLIGLKPSRGRMPVGPGSYRSWQGASVHFALTKSVRDT 217

Query: 95  Q-----LFLQQFSAPAPAA 108
           +     L ++Q  +P P A
Sbjct: 218 RNLLYYLQMEQMESPFPLA 236


>MA4081 [H] COG1232 Protoporphyrinogen oxidase Mac Methanosarcina
           acetivorans str.C2A
          Length = 437

 Score = 32.0 bits (71), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 125 GQSLGTNYFERNQPAVKAKFGDKAKTWPDVWNFGRV-VRNAMSHRGE 170
           G+S+  N+F    P +K+KFGD A+     W  GRV +R+     GE
Sbjct: 147 GKSVYENFF---APLMKSKFGDNAENVSAAWLIGRVKIRSDRGKEGE 190


>SP1402_2 [S] COG3270 Uncharacterized conserved protein Spn Streptococcus
           pneumoniae TIGR4
          Length = 154

 Score = 31.6 bits (70), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 124 LGQSLGTNYFERNQPAVKAKFGDK----AKTWPDVWNFGRVVRNAMSHRGEITFTSPNAD 179
           L Q    N+ + N P +   FGD+     +  PD+W   ++ RN + H G  TF     +
Sbjct: 24  LWQEFAQNHLKVNLPGILQIFGDQLYLLPELLPDLWKL-KIARNGL-HLG--TFKKKRFE 79

Query: 180 PVSWKGLTYSPSD 192
           P    GL   PS 
Sbjct: 80  PSFALGLALKPSQ 92


>ML1942 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Mle
           Mycobacterium leprae
          Length = 376

 Score = 31.2 bits (69), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 107 AAHEVIPLGAMNALMFNLGQSLGTNYFERNQPAVKAKFGDKAKTWPDVWNFGRVVRNAMS 166
           AA  ++P G      + +      N+F+   P +KA      + WP V   GR+VRN M+
Sbjct: 238 AAEHLVPGGTAPGQAYFINDGEPINFFDFMGPIIKAC----GENWPRVRISGRLVRNVMA 293