BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4300.p (406 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC2770 Non COG 157 3e-38 FN1999 Non COG 89 2e-17 FN2000 [R] COG3550 Uncharacterized protein related to capsule bi... 88 4e-17 mll6953 [R] COG3550 Uncharacterized protein related to capsule b... 60 1e-08 HI0665 [R] COG3550 Uncharacterized protein related to capsule bi... 50 1e-05 >CC2770 Non COG Length = 435 Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 119/388 (30%), Positives = 188/388 (48%), Gaps = 39/388 (10%) Query: 8 WGECWPLGTLEQDADENIYFEYSPQALEEKLELSPLKLPLSRNVYSGFPE----TQHRLP 63 WG +LE D E F Y P + ++ +PL +PL V+S FP+ + H LP Sbjct: 10 WGSRIGAVSLE-DGAETAVFAYEPSFIASGIQPAPLMMPLKAGVFS-FPDLPPRSFHGLP 67 Query: 64 GLIADSLPDGWGMLLMEKLWMKQGIDAAKRSPLDRLSFVGHFTMGALTYF-LSAVHRDTE 122 G++AD+LPD +G +L++ QG + ++RL + G MGAL + ++ R Sbjct: 68 GMLADALPDKYGHVLIDAWLATQGRSPESFNAVERLCYTGRRGMGALEFSPMAGPRRRVS 127 Query: 123 NDVGLRQIAEHAQEVMIGK-----------DYEFLERLVSLGAAPHGARPKALVDYNVST 171 + + + + A EV+ + + L ++S+G + GAR KA++ +N +T Sbjct: 128 SKIDIDALVTLASEVLTHRHDLRASFADADKADALRDILSVGTSAGGARAKAVIAWNPAT 187 Query: 172 GAMGVHGVPNGVP---WLVKFQ--SSGEHKEVC------AIEHYYAGLARACGIDIPDTR 220 + V G WL+KF S KE+ A+EH Y +A A GID+ ++R Sbjct: 188 NEVRSGQVEAGAGFGYWLLKFDGVSGNRDKELADPKGYGAVEHAYGQMAAAAGIDVAESR 247 Query: 221 YFDLSPELGA--FGVARFDREDGMC-VPIHTLAGATNADFRLPGAIDYQTFLEVTRNFTK 277 + E G F RFDR DG + + +LA + DF P A Y+ L R Sbjct: 248 LLE---EGGRRHFMSKRFDRLDGGGKLHMQSLAAIAHLDFNDPVANSYEQALFTMRRMGL 304 Query: 278 DEREVEKAFARVVFNVVFNNRDDHPKNFSFRLSRERQWKLSPAYDLTFASGTGG----YH 333 ++E+ F R+VFNV+ N+DDH KN +F + R +W+LSPA+D+T++ G H Sbjct: 305 SMAQLEEQFRRMVFNVLARNQDDHVKNIAFLMDRAGRWRLSPAFDITWSYNPDGEWTSRH 364 Query: 334 HMDVMGEAKAITRKHMIELATGAGISTG 361 M + G+ + A A IS G Sbjct: 365 QMSINGKRDGFDFADLEACAKTASISRG 392 >FN1999 Non COG Length = 175 Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 18/171 (10%) Query: 73 GWGMLLMEKLWMKQGIDAAKRSPLDRLSFVGHFTMGALTY---FLSAVHRDTENDVGLRQ 129 WG LL++++ Q I+ + +P+ RL+ VG MGAL+Y + +D + D Sbjct: 10 AWGRLLVDRMLNSQNINPREINPISRLAIVGETGMGALSYNPAYNLLEDKDYQEDYD--S 67 Query: 130 IAEHAQEVMIGKDYEFLERLVSLGAAPHGARPKALVDYNVSTGAMGVHGVPNGVPWLVKF 189 +A ++++ K + L+ L LG + GA+PK L N W++KF Sbjct: 68 LALSCKKILNTKYSDDLDNLFRLGGSSGGAKPKILTKIN-------------NEDWIIKF 114 Query: 190 QSSGEHKEVCAIEHYYAGLARACGIDIPDTRYFDLSPELGAFGVARFDRED 240 SS + K + +E+ Y+ A+ C I++P+T+ F G FGV RFDR++ Sbjct: 115 PSSLDDKNIGKLEYLYSLCAKKCKINMPETKLFPSKISSGYFGVKRFDRKN 165 >FN2000 [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes Fnu Fusobacterium nucleatum Length = 145 Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 9/136 (6%) Query: 248 TLAGATNADFRLPGAIDYQTFLEVTRNFTKDEREVEKAFARVVFNVVFNNRDDHPKNFSF 307 +++G R+P +DY +++T N TK +VEK F + FNV +NRDDH KNFSF Sbjct: 3 SVSGLLETSHRIPN-LDYNDLMQLTLNLTKSFEDVEKLFRLMCFNVFSHNRDDHSKNFSF 61 Query: 308 RLSRE-RQWKLSPAYDLTFASGTGGYHHMDVMGEAKAITRKHMIELATGAGISTGKAQEH 366 + E ++W+LSPAYDLT++ G H V G K ++++A G+ KA+ Sbjct: 62 IYNEESKKWELSPAYDLTYSYSINGEHATTVNGNGVNPDLKDILKVAENIGLDKKKAEN- 120 Query: 367 IDRHLVVAGRFGEVLK 382 +A E++K Sbjct: 121 ------IATEIKEIVK 130 >mll6953 [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes Mlo Mesorhizobium loti Length = 420 Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 116/288 (40%), Gaps = 24/288 (8%) Query: 96 LDRLSFVGHFTMGALTYFLSAVHRDTENDVGLRQIAEHAQEVMIGKDYEFLERLVSLGAA 155 LD L+ VG +G + + + + + DV R I + + G Y L ++ + Sbjct: 84 LDLLAVVGRSQIGRIRF--TGMDEELVEDVPFRSIDDLLRARRAGDLYNDLLETYAVHSG 141 Query: 156 PHGARPKALVDYNVSTGAMGVHGVP-NGVPWLVKFQSSGEHKEVCAIEHYYAGLARACGI 214 G +PK LV + G + G +VK E+ E+ A E + A+ G+ Sbjct: 142 VAGVQPKVLVRAREDDPSDGRQSLSVRGATHIVKMWDPDEYPELAANEFFCLMAAQQVGL 201 Query: 215 DIPDTRYFDLSPELGAFGVARFDREDGMCV---PIHTLAGATNADFRLPGAIDYQTFLEV 271 ++PD F LS + A V RFD DG L G T+ D + G + + F + Sbjct: 202 EVPD---FRLSEDGLALVVERFDLTDGSYSGYEDFCALNGVTSKD-KYNGGYETKLFKRI 257 Query: 272 TRNFTKDEREV---EKAFARVVFNVVFNNRDDHPKNFSFRLSR-ERQWKLSPAYDLTFAS 327 + F E V E AF V N N D H KNF E +L+P YDL Sbjct: 258 -KEFVSPENAVGSLEVAFRLFVINCGIRNGDAHLKNFGVVYKDAESPVRLAPVYDLI--- 313 Query: 328 GTGGYHHMDVM-----GEAKAITRKHMIEL-ATGAGISTGKAQEHIDR 369 T Y D M G RK + L T A + G+ E +++ Sbjct: 314 TTRAYIKNDAMALTLDGSTAWPDRKKLDRLGVTRANLRPGRVAEIVEQ 361 >HI0665 [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes Hin Haemophilus influenzae Length = 343 Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 21/154 (13%) Query: 191 SSGEHKEVCAIEHYYAGLARACGIDIPDTRYFDLSPELG----AFGVARFDREDGMCVPI 246 S E+ + EH + + G D+P+ + E AF + RFDR D P+ Sbjct: 88 SPEEYPFLAENEHATMRIMKELGFDVPENGLVSFAGEQNHKEFAFVITRFDR-DKQQKPM 146 Query: 247 HT--LAGATNA--DFRLPGAIDYQT---------FLEVTRNFTKDEREVEKAFARVVFNV 293 H L GA N + GA + Q L+ T N +RE+ F R+++ Sbjct: 147 HQEQLDGAMNIRDKYGKIGADNEQYVSYEQIAKFILQHTENHLAQQREI---FRRIIYAY 203 Query: 294 VFNNRDDHPKNFSFRLSRERQWKLSPAYDLTFAS 327 + N D H +NFSF + KL+P YD S Sbjct: 204 LLGNNDLHLRNFSFIYPKNSHPKLAPIYDFVSVS 237