BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4290.p (787 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1939 [L] COG3593 Predicted ATP-dependent endonuclease of the O... 316 1e-85 MA2139 [L] COG3593 Predicted ATP-dependent endonuclease of the O... 82 3e-15 AGpA32 [L] COG3593 Predicted ATP-dependent endonuclease of the O... 67 2e-10 MA1866 [L] COG3593 Predicted ATP-dependent endonuclease of the O... 63 3e-09 mlr8165 Non COG 60 2e-08 >PA1939 [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family Pae Pseudomonas aeruginosa Length = 665 Score = 316 bits (809), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 220/652 (33%), Positives = 326/652 (50%), Gaps = 53/652 (8%) Query: 78 LTALKNFLSDSPGFRAFDISLSHWGTLRALCQKWEALAEDPTTDNKDVEMWDEQLAILQS 137 + AL+ FL D+++++W + L +WEA AE PT D L S Sbjct: 1 MLALRIFLLSPTRLNLRDVTIANWTKIDLLGSEWEAGAE-PTVD-------------LDS 46 Query: 138 CMPAIDLWFDAQEGAFSYVRAFMTSLTWEGGPIGVRV--RLEPLEDSTALRKLAWRYREA 195 +P++D+W D +V + +L W GG +GVR+ R++ L D +A R Sbjct: 47 LLPSLDVWLDVPLREIQHVVDILPTLDWSGGLLGVRLAFRIKNL-DKLKSEYIAQRTAAR 105 Query: 196 RAPVKGLPAEGHS---WPTDLLDYWLRNPGELRRISAYRLDPAQG-PLVRPEIQDPQPLL 251 A + G E WP +L D+ R + AY LDPA P R + PQ L Sbjct: 106 DAAIVGPNGESIKIAVWPRNLTDFLERRLRAHLELLAYPLDPAAVVPPGRSGLATPQRLP 165 Query: 252 KTAAPVELVHLRNLIRVDFVPAQRGLG----AEDDEMRIEGASAR-PGLFSNQLLKFAKQ 306 +A E + LI++D + AQR ++ E + E + R S+QL + + Sbjct: 166 ASALAFEHPPFKKLIKIDEIAAQRDFADASSSDGGEDKGEANNRRFKRRLSDQLRSYYDR 225 Query: 307 YLNVAPSGHGNREDLVKAIGKAQLELDSSISAALRPAMKEVEVLGYPGLHDAKGIHFRTR 366 +L+ + + + AI A+ D+ + A +E+E LGYPG+ + K + T Sbjct: 226 HLDPTKTPSDKDYEALGAIQAAERSFDARLEEGFSAAFQELEDLGYPGMSNPK-LKISTL 284 Query: 367 IQTADLLDHGTAVQYRL-DPEVAAES---LPEHSIGLGYQNLQSLSFMLVSFR-----AA 417 ++ D L HG++VQY++ DP + LPE GLGYQNL ++ FML+ FR Sbjct: 285 LRGTDGLKHGSSVQYQVADPSGDGSNTLQLPEDYSGLGYQNLIAMVFMLMGFRDEWMRVE 344 Query: 418 RLSAKQGLPV-----PIHLVMVEEPEAHLHVQVQRNFSLNAHGLLCSKDELH--RGLRSQ 470 + +G V P+HLV+VEEPEAHLH QVQ+ F A+ LL +L +Q Sbjct: 345 KAGILEGADVSHEIQPLHLVLVEEPEAHLHAQVQQVFINKAYTLLRKHADLGVAENYCTQ 404 Query: 471 LVISTHSSHLAHGDSFTRLRYVKRIPGDGAGKKPSTDVVNLGDAFGDDDETRTFAERYFQ 530 L++STHSSH+AH F LRY +R P G+ P+T V NL FGD DET+ F +RY + Sbjct: 405 LIVSTHSSHVAHEADFANLRYFRRRPAASMGETPTTTVANLSYIFGDGDETKRFVKRYLK 464 Query: 531 VQHTDLLFADAAIFVEGTAERMLVPMFIKQNFEALAKKYISFLDIGGSHAHRLRPLVERL 590 H DL FAD IFVEG AER+LVP FI+ +F L+++Y++ L++GGSH H R LV+ L Sbjct: 465 ATHCDLFFADGVIFVEGQAERILVPHFIRHHFPELSRRYVTLLELGGSHVHSFRNLVDAL 524 Query: 591 GIPTTVITDLDPV----LPTKDTKNRTIRAAVHIAGQEGIECGNDTLTSWHPMLPMFYDY 646 GI T +I DLD + K+ + T + + + N L WHP + + Sbjct: 525 GIATLIIGDLDATTAVKIIDKNMRETTRWKSARPEQGKAQQTANSVLKDWHPGKKLIDEL 584 Query: 647 GKPTESQLVWTSATGVKVRFAWQLPVAAASAQ------WPSSFEDSLILSNI 692 + T+ ++ A+Q PV A P +FED+LIL N+ Sbjct: 585 VALPPDGHISTAGGDYELYVAYQKPVNVKGASEDSDLIIPRTFEDALILENL 636 >MA2139 [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family Mac Methanosarcina acetivorans str.C2A Length = 689 Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 29/197 (14%) Query: 392 LPEHSIGLGYQNLQSLSFMLVSFRAARLSAKQGLPVPIH-LVMVEEPEAHLHVQVQRNFS 450 +P + GLGY NL +S +L + S G I ++++EEPEAHLH +Q NF Sbjct: 312 IPIFNNGLGYNNLIYISLVLSNLEIIT-SDHFGENAKIFPILLIEEPEAHLHPALQYNF- 369 Query: 451 LNAHGLLCSKDEL-HRGLRSQLVISTHSSHLAHG---DSFTRLRYVK-----RIPGDGAG 501 L K+E+ ++ + Q+ ++THS+H+ DS + K R P Sbjct: 370 -----LRFLKEEIKNKNISRQIFVTTHSTHITAAVGLDSIICMESHKDHILARYPSLVFS 424 Query: 502 KKPSTDVVNLGDAFGDDDETRTFAERYFQVQHTDLLFADAAIFVEGTAERMLVPMFIKQN 561 KP DD E++ + ERY +++LF+ IFVEG AE++LVP + Sbjct: 425 DKP------------DDIESKKYIERYLDATKSNMLFSKGVIFVEGLAEQLLVPRLAEYR 472 Query: 562 FEALAKKYISFLDIGGS 578 L K +I+ + +GGS Sbjct: 473 SLPLDKCHIAVVGVGGS 489 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 34 KQEPPLRLACVEICNFRRLAKTRVELDESTTILVGANNSGKTSILTALKNFLSDS 88 K++ + ++ + + NFR T VE E + +G NNSGKT++L AL+ +S Sbjct: 7 KEDVLMYISKIRMQNFRCFCDTSVEFYEGLNVFIGENNSGKTTVLKALQLIFDNS 61 >AGpA32 [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 622 Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 91/210 (43%), Gaps = 27/210 (12%) Query: 398 GLGYQNLQSLSFMLVSFRAARLSAKQGLPVPIHLVMVEEPEAHLHVQVQRNFSLNAHGLL 457 GLGY NL ++ +L + ++VEEPEAHLH Q+Q LL Sbjct: 295 GLGYNNLIFMAVVLSEL-------SKNAEASFRSLIVEEPEAHLHPQLQA-------VLL 340 Query: 458 CSKDELHRGLRS---QLVISTHSSHLAHGDSFTRLRYVKRIPGDGAGKKPSTDVVNLGDA 514 + G+ Q+ +++HS + A + + + + A P + VN A Sbjct: 341 KYLSSIQNGVGERDVQVFVTSHSPNFASIADLNSIACLYEVDDNVASFHPGS--VNF--A 396 Query: 515 FGDDDETRTFAERYFQVQHTDLLFADAAIFVEGTAERMLVPMFIKQNFEALAKKYISFLD 574 G ++ + RY V +L FA IFVEG AE ++V + + L IS + Sbjct: 397 KGKKEKLK----RYLDVTRAELFFARRVIFVEGAAELLMVNLLATKAGFDLRNHGISLIS 452 Query: 575 IGGSHAHRLRPLVERLG--IPTTVITDLDP 602 + G + PL G IP +VITD DP Sbjct: 453 VEGLNFDSFMPLFGEAGIKIPVSVITDADP 482 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 5/93 (5%) Query: 14 SAVAAQVVATAQAAAKSADIKQEPPLRLACVEICNFRRLAKTRVELDESTTILVGANNSG 73 +AV + +V + A SA E + LA ++I NFRR ++T ++ ++VG NN G Sbjct: 22 AAVRSTLVIVSSARHSSA-TGLEIRVHLASLKIKNFRRFSETTIKFKSGLNVIVGPNNIG 80 Query: 74 KTSILTALKNFLSDS----PGFRAFDISLSHWG 102 K++++ AL++ L+ + P F DI + G Sbjct: 81 KSAVVDALRSLLAGADDPYPRFTVDDIHVPKLG 113 >MA1866 [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family Mac Methanosarcina acetivorans str.C2A Length = 613 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 20/180 (11%) Query: 398 GLGYQNLQSLSFMLVSFRAARLSAKQGLPVPIHLVMVEEPEAHLHVQVQRNFSLNAHGLL 457 GLGY NL ++ ++ R++ K + + ++EEPEAHLH Q+Q N N + Sbjct: 311 GLGYNNLIYIA-TIIGDLIERVNRKSENYIAL---LIEEPEAHLHPQLQ-NILFNYFKNI 365 Query: 458 CSKDELHRGLRSQLVISTHSSHLAHGDSFTRLRYVKRIPGDGAGKKPSTDVVNLGDAFGD 517 SK+ Q+ +++HS + + ++ + D++ L D + Sbjct: 366 ESKN-------IQIFLTSHSPTITAKTDIDTVILMEN--------SFNVDILPLKDIEFE 410 Query: 518 DDETRTFAERYFQVQHTDLLFADAAIFVEGTAERMLVPMFIKQNFEALAKKYISFLDIGG 577 D+ + + +R+ V + L FA+ IFVEG +E ML+ +F K L K I ++IGG Sbjct: 411 DETDKKYLQRFLDVTKSQLFFANGVIFVEGISEAMLLHIFSKILGIDLEKNGIEVVNIGG 470 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 27/37 (72%) Query: 46 ICNFRRLAKTRVELDESTTILVGANNSGKTSILTALK 82 + NFR + + +EL+ +++GANNSGKTSIL +L+ Sbjct: 3 VKNFRCIKEINLELNSGLNVIIGANNSGKTSILDSLR 39 >mlr8165 Non COG Length = 608 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 87/188 (46%), Gaps = 32/188 (17%) Query: 398 GLGYQNLQSLSFMLVSFRAARLSAKQGLPVPIHLVMVEEPEAHLHVQVQRNFSLNAHGLL 457 GLG N+ +S + F RL+ ++ +++ EEPEAHLH Q+Q L G L Sbjct: 284 GLGLNNILYVSIWIEYFNK-RLAQEKSAG---QIILFEEPEAHLHPQLQ----LALFGAL 335 Query: 458 CSKDELHRGLRSQLVISTHSSHL---AHGDSFTRLRYVKRIPGDGAGKKPSTDVVNLGDA 514 + L Q +++THS+H+ A SF L V + G +G A Sbjct: 336 -------KALPFQSILTTHSTHITSQADLSSFVVLTNVG-VAGTASGVP----------A 377 Query: 515 FGDDDETRTFA--ERYFQVQHTDLLFADAAIFVEGTAERMLVPMFIKQNFEA-LAKKYIS 571 D E A ER+ +++LFA I VEG AE L+P +K+ E L ++ I+ Sbjct: 378 ENKDLEQNDIADLERFLDATKSNMLFARKVILVEGPAELFLIPPLVKEVMEIDLDREGIA 437 Query: 572 FLDIGGSH 579 + I G H Sbjct: 438 VIPIYGVH 445 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 30/44 (68%) Query: 39 LRLACVEICNFRRLAKTRVELDESTTILVGANNSGKTSILTALK 82 + ++ + I NFR A V + E+TT ++G NN+GKT++L AL+ Sbjct: 1 MHISKITIRNFRSFAHLDVRIAENTTCIIGENNTGKTNLLQALR 44