BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4269.p         (129 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0157 [H] COG1539 Dihydroneopterin aldolase Rso Ralstonia sola...   204   4e-53
VC0524 [H] COG1539 Dihydroneopterin aldolase Vch Vibrio cholerae       47   2e-05
CC0416 [H] COG1539 Dihydroneopterin aldolase Ccr Caulobacter vib...    46   2e-05
Rv3607c [H] COG1539 Dihydroneopterin aldolase Mtu Mycobacterium ...    43   2e-04
MT3712.1 [H] COG1539 Dihydroneopterin aldolase MtC Mycobacterium...    43   2e-04

>RSc0157 [H] COG1539 Dihydroneopterin aldolase Rso Ralstonia solanacearum
          Length = 130

 Score =  204 bits (519), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 105/127 (82%)

Query: 2   LFLSHPSLQDCRRLFLRNYEVFINIGVHEFEKKGEQRILINVDLYVPLAETTPTADHLDE 61
             LSHP L  CRRLFLRNYEV INIGVHEFEKKGEQR+L+N+DLYVPLA +TP  D L E
Sbjct: 3   FLLSHPRLAHCRRLFLRNYEVQINIGVHEFEKKGEQRVLVNIDLYVPLAYSTPQHDKLHE 62

Query: 62  VVDYDFIRSTIAERMARGHIHLQETLCDDVMTAMLAHPKVRAVRVSTEKPDVYPDCDSVG 121
           VVDYD +R T+A RMA+GH+HLQETLCDDV+  +LAHP V A RVS EKPD YPDC+SVG
Sbjct: 63  VVDYDLMRETVARRMAQGHVHLQETLCDDVLAGLLAHPHVLAARVSAEKPDAYPDCESVG 122

Query: 122 VETFRIK 128
           VE FRIK
Sbjct: 123 VEVFRIK 129


>VC0524 [H] COG1539 Dihydroneopterin aldolase Vch Vibrio cholerae
          Length = 129

 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 7/112 (6%)

Query: 14  RLFLRNYEVFINIGVHEFEKKGEQRILINVDLYVPLAETTPTADHLDEV---VDYDFIRS 70
           ++F+   EV   IGV+++E++ +Q++++++++    A     A   D+V   +DY  +  
Sbjct: 15  KVFIEQLEVITTIGVYDWEQQIKQKLVLDLEM----AHDNRAAGKSDDVADALDYAQVSQ 70

Query: 71  TIAERMARGHIHLQETLCDDVMTAMLAHPKVRAVRVSTEKPDVYPDCDSVGV 122
            + E + +G   L E + ++V   ++    V  +R+   KP   P    VGV
Sbjct: 71  AVLEHIEQGRFLLVERVAEEVAELIMTRFAVPWLRIRLTKPGAVPQAKGVGV 122


>CC0416 [H] COG1539 Dihydroneopterin aldolase Ccr Caulobacter vibrioides
          Length = 115

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 14  RLFLRNYEVFINIGVHEFEKKGEQRILINVDLYVPLAETTPTADHLDEVVDYDFIRSTIA 73
           ++F+R  +V   IGV++ E    Q ++++V+L V  +      + L + V+Y+ +     
Sbjct: 3   KVFVRGLKVDAQIGVYDHEHGRLQPLVVDVELDVAASHC----ERLGDTVNYEMVGEAAR 58

Query: 74  ERMARGHIHLQETLCDDVMTAMLAHPKVRAVRVSTEK 110
             +A GHI L ET  + +  A  A P+V   RV  EK
Sbjct: 59  ALVAEGHIDLVETFAERLAQACFADPRVTRARVRVEK 95


>Rv3607c [H] COG1539 Dihydroneopterin aldolase Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 133

 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 5/100 (5%)

Query: 14  RLFLRNYEVFINIGVHEFEKKGEQRILINVDLYVPLAETTPTADHLDEVVDYDFIR--ST 71
           R+ LR   V    GV++ E+   QR +I+V +++ LAE   + D  D    YD++R  S 
Sbjct: 4   RIELRGLTVHGRHGVYDHERVAGQRFVIDVTVWIDLAEAANSDDLADT---YDYVRLASR 60

Query: 72  IAERMARGHIHLQETLCDDVMTAMLAHPKVRAVRVSTEKP 111
            AE +A     L ET+  ++   ++   +V AV V+  KP
Sbjct: 61  AAEIVAGPPRKLIETVGAEIADHVMDDQRVHAVEVAVHKP 100


>MT3712.1 [H] COG1539 Dihydroneopterin aldolase MtC Mycobacterium
           tuberculosis CDC1551
          Length = 133

 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 5/100 (5%)

Query: 14  RLFLRNYEVFINIGVHEFEKKGEQRILINVDLYVPLAETTPTADHLDEVVDYDFIR--ST 71
           R+ LR   V    GV++ E+   QR +I+V +++ LAE   + D  D    YD++R  S 
Sbjct: 4   RIELRGLTVHGRHGVYDHERVAGQRFVIDVTVWIDLAEAANSDDLADT---YDYVRLASR 60

Query: 72  IAERMARGHIHLQETLCDDVMTAMLAHPKVRAVRVSTEKP 111
            AE +A     L ET+  ++   ++   +V AV V+  KP
Sbjct: 61  AAEIVAGPPRKLIETVGAEIADHVMDDQRVHAVEVAVHKP 100