BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4266.p         (64 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPy1149 [V] COG1132 ABC-type multidrug transport system, ATPase ...    29   3.0  
SP1884_2 [G] COG1263 Phosphotransferase system IIC components, g...    28   3.8  
TM0773 Non COG                                                         28   6.3  
BS_yxeJ Non COG                                                        28   7.5  

>SPy1149 [V] COG1132 ABC-type multidrug transport system, ATPase and
           permease components Spy Streptococcus pyogenes M1 GAS
          Length = 575

 Score = 28.9 bits (63), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 2   IRWIIVIFLAVIVFSTLLPWLEKLGIGRL----PGDLRFRLFGRIFSLPFA 48
           ++W++   L +IV +TL+ W+  L   RL       L+ +L  +I  LPFA
Sbjct: 60  LKWLLGQMLVIIVVNTLIQWVMPLVYSRLLYQYSQQLKDKLLEKIHRLPFA 110


>SP1884_2 [G] COG1263 Phosphotransferase system IIC components,
           glucose/maltose/N-acetylglucosamine-specific Spn
           Streptococcus pneumoniae TIGR4
          Length = 383

 Score = 28.5 bits (62), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)

Query: 24  KLGIGRLPGDLRFRLFGRIFSLPFASTILISVVVFLL 60
            +GIG LPG L  +     + LPFA T+L+++VV +L
Sbjct: 338 SIGIGGLPGILSIQ---PQYMLPFAGTMLVAIVVPML 371


>TM0773 Non COG
          Length = 73

 Score = 27.7 bits (60), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 3  RWIIVIFLAVIVFSTLLPWLEKLG-IGRLPGDLRFRLFGRIFSLPFASTILISVVV 57
          +++I++ L ++ F  LL   E++  +G+LPGD+  +    +F  P  ++++IS++V
Sbjct: 7  KFLILMGLILVAFGILLILFERIPFLGKLPGDIVIKRKNFVFYFPLMTSLIISLLV 62


>BS_yxeJ Non COG
          Length = 75

 Score = 27.7 bits (60), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 4  WIIVIFLAVIVFSTLLPWLEKLGIGRLPGDLRFRLFGRIFSLPF 47
          W  + F  ++  S  +  L+K   G+  G++ + + GRI SL F
Sbjct: 17 WSQLFFYTIVTASEWIGGLQKRRKGKGNGEILYEIIGRILSLCF 60