BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4265.p (218 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1554 [TK] COG0745 Response regulators consisting of a CheY-li... 284 9e-77 PA4776 [TK] COG0745 Response regulators consisting of a CheY-lik... 249 3e-66 RSc3404 [TK] COG0745 Response regulators consisting of a CheY-li... 239 4e-63 STM3177 [TK] COG0745 Response regulators consisting of a CheY-li... 223 3e-58 ygiX [TK] COG0745 Response regulators consisting of a CheY-like ... 221 1e-57 >RSp1554 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 246 Score = 284 bits (727), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 143/226 (63%), Positives = 177/226 (78%), Gaps = 9/226 (3%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYA---------MLLLD 51 MRVLLVEDD M+GEAVRKGLRQDGF IDWV+DG++A A+ A ++LLD Sbjct: 4 MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRDGEAAVQAIGAPGAASEAGGSMFDLMLLD 63 Query: 52 LGLPQKDGLAVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSAR 111 LGLP++DGL V+ +R RG T+P+LI TARDAVADRVAGL+AGADDYL+KPFDL+EL+AR Sbjct: 64 LGLPKRDGLDVVHEVRRRGITLPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAAR 123 Query: 112 MRALSRRQAGRAESLVQVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSR 171 M AL RRQ GRA+ L++ EV+LNP T EV G P+ LS REFA+L A + RPG V S Sbjct: 124 MHALLRRQGGRADPLMRHGEVLLNPVTREVLRAGMPIKLSGREFAVLHALLSRPGKVWSI 183 Query: 172 AQLEEKLYGWDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLVP 217 AQL++ LYGWD+ + SN VEV+IHALRKK+GS FI+N+RGVGY++P Sbjct: 184 AQLQDNLYGWDEEVGSNTVEVYIHALRKKLGSHFIQNIRGVGYVIP 229 >PA4776 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 221 Score = 249 bits (636), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 120/214 (56%), Positives = 164/214 (76%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LL EDD ++G+ +R GLR +G T++WV DG +A+ AL T+++ +L+LD+GLP++ GL Sbjct: 1 MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLVLDIGLPRRSGL 60 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 +LR LR +G PVL+ TARD VADRVAGLD+GADDYL KPFDL+EL AR+RAL+RR Sbjct: 61 DILRNLRHQGLLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRTT 120 Query: 121 GRAESLVQVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 GRA + E+ L+PATH+VT+ G V L+ RE+ALL+ ++ G VLSR QLE+ LYG Sbjct: 121 GRALPQLVHGELRLDPATHQVTLSGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLYG 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGY 214 W +ESNA+EVH+H LR+K+G+ I+ VRG+GY Sbjct: 181 WSGDVESNAIEVHVHHLRRKLGNQLIRTVRGIGY 214 >RSc3404 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 221 Score = 239 bits (609), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 130/217 (59%), Positives = 162/217 (74%), Gaps = 1/217 (0%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MRVLL+EDDPM+G V LR + +DWV+DG++A + Y +LLLDLGLP +DG Sbjct: 1 MRVLLIEDDPMIGAVVEAALRDAAYAVDWVRDGRTAVDVSAHQHYDLLLLDLGLPGQDGH 60 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 AVLRTLR R N +PVLI TARDAV +RV GLD GADDY++KPF++ EL ARMRA+ RR+ Sbjct: 61 AVLRTLRARDNPVPVLILTARDAVDERVRGLDGGADDYVLKPFEMVELLARMRAVLRRRG 120 Query: 121 GRAESLVQVREVVLNPATHEVTVG-GNPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLY 179 G A ++ + L+PATHEV G G PV LS REFALLQA M RPG +LSR +LEE++Y Sbjct: 121 GAASPVLSNGVLSLDPATHEVRAGDGEPVRLSGREFALLQALMLRPGAILSRGELEERIY 180 Query: 180 GWDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLV 216 GW + SNAVE IHALRKK+G++ IKNVRGVG++V Sbjct: 181 GWGHEVASNAVEFLIHALRKKLGAESIKNVRGVGWMV 217 >STM3177 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sty Salmonella typhimurium LT2 Length = 219 Score = 223 bits (568), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 109/214 (50%), Positives = 148/214 (69%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LLVEDD ++G+ ++ GL + GF++DW +G+ AL + Y ++LDL LP DG Sbjct: 1 MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 +LR RE+G PVLI TARDA+A+RV GL GADDYL KPF L E++AR+ AL RR + Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 GRAESLVQVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 G+A S ++ +V LNP T+ G P+ L +EFALL+ + G VL R +EEKLY Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGY 214 WDD + SNAVEVH+H LR+K+GS+FI+ V G+GY Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGY 214 >ygiX [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 219 Score = 221 bits (563), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 108/214 (50%), Positives = 147/214 (68%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LL+EDD ++G+ ++ GL + GF++DW G+ AL + Y ++LDL LP DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 +LR RE+G PVLI TARDA+A+RV GL GADDYL KPF L E++AR+ AL RR Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GRAESLVQVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 G+A + ++ V+L+P T+ G P+ L +EFALL+ M G VLSR +EEKLY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGY 214 WD+ + SNAVEVH+H LR+K+GSDFI+ V G+GY Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214