BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4257.p         (149 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yerH [R] COG4851 Protein involved in sex pheromone biosynthes...    29   3.1  
AGc2398_1 [L] COG0550 Topoisomerase IA Atu Agrobacterium tumefac...    29   3.4  
RSc2856 [GEPR] COG0477 Permeases of the major facilitator superf...    29   3.5  
TM1756 [C] COG3426 Butyrate kinase Tma Thermotoga maritima             29   3.9  
YPO3566 [O] COG0265 Trypsin-like serine proteases, typically per...    28   5.9  

>BS_yerH [R] COG4851 Protein involved in sex pheromone biosynthesis Bsu
           Bacillus subtilis
          Length = 396

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 6/52 (11%)

Query: 101 ASLLSRRWL----RKPMLLGGVMA--AVGGLAYYFSQRGNAPEEVDMKENSL 146
           AS+L   +L    +  + LGGVM   A+  + YY  + G+  +EV++K+++L
Sbjct: 162 ASMLEHDYLVRKDKNSIQLGGVMIGLALNSVYYYREKTGDPQKEVEIKDSTL 213


>AGc2398_1 [L] COG0550 Topoisomerase IA Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 580

 Score = 29.3 bits (64), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 12/77 (15%)

Query: 24  KVLAQGALYRLGVMEAREVVRE---NLSAESLAKGALSRVGHFAVSLFGGGKTVQSIKSL 80
           K L +GA Y +  +EA+ V R      +  +L + A SR+G      FG  +T+Q  + L
Sbjct: 234 KALLEGATYVVDTVEAKPVKRNPGPPFTTSTLQQAASSRMG------FGASRTMQVAQKL 287

Query: 81  SAG---GLGSVNLQTVM 94
             G   G  +V L T M
Sbjct: 288 YEGIDIGGETVGLITYM 304


>RSc2856 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso
           Ralstonia solanacearum
          Length = 439

 Score = 29.3 bits (64), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 74  VQSIKSLSAGGLGSVNLQTVMPLLMTGASLL-SRRWLRKPMLLGGVMAAV 122
           V ++     G LG + L  V   L T  S   S RW RKP+LL G++AA+
Sbjct: 279 VSTLHFTRPGFLGLLCLAVVFMALATPLSAWASDRWGRKPVLLTGILAAI 328


>TM1756 [C] COG3426 Butyrate kinase Tma Thermotoga maritima
          Length = 375

 Score = 28.9 bits (63), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 16  MTHEERKRKVLAQGALY-RLGVMEAREVVRENLSAESLAK 54
            T+EE K++++  G L   LG  +AREVVR     +  AK
Sbjct: 232 FTYEEMKKRIVGNGGLVAYLGTSDAREVVRRIKQGDEWAK 271


>YPO3566 [O] COG0265 Trypsin-like serine proteases, typically periplasmic,
           contain C-terminal PDZ domain Ype Yersinia pestis
          Length = 457

 Score = 28.5 bits (62), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 13/103 (12%)

Query: 13  DHGMTHEERKRKVLAQGALYR---LGVMEAREVV------RENLSAESLAKGALSRVGHF 63
           +H + + ++ R  L  G  Y    LG  E  ++        +NL+A  +A     RVG F
Sbjct: 110 NHVINNADKIRVQLNDGREYDAKLLGRDEQTDIALLQLTDAKNLTAIKIADSDNLRVGDF 169

Query: 64  AVSL---FGGGKTVQSIKSLSAGGLGSVNLQTVMPLLMTGASL 103
           AV++   FG G+T  S   +SA G   +NL+ +   + T AS+
Sbjct: 170 AVAVGNPFGLGQTATS-GIISALGRSGLNLEGLENFIQTDASI 211