BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4242.p         (195 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC3054 [G] COG0279 Phosphoheptose isomerase Cac Clostridium ace...   106   4e-23
mll2561 Non COG                                                       101   1e-21
FN0502 [G] COG0279 Phosphoheptose isomerase Fnu Fusobacterium nu...   100   3e-21
jhp0791 [G] COG0279 Phosphoheptose isomerase jHp Helicobacter py...    97   3e-20
Cj1424c [G] COG0279 Phosphoheptose isomerase Cje Campylobacter j...    96   5e-20

>CAC3054 [G] COG0279 Phosphoheptose isomerase Cac Clostridium acetobutylicum
          Length = 196

 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 85/145 (58%), Gaps = 1/145 (0%)

Query: 39  QCWLQGRQVFLCGNGGSAGNAIHLANDFLYGIAKRTGGGMRVSALSANAAVLTCLANDIG 98
           Q +  G++V LCGNGGSA ++ H+A +F+    +     +   AL+ N +VLT + ND  
Sbjct: 38  QAYKLGKKVLLCGNGGSAADSQHIAAEFVSKF-RLDRKALPAIALTVNTSVLTSIGNDYS 96

Query: 99  YDHIYSEQLAVQAQPGDLLIALSGSGNSANILRALEQARKMDVISCAILGYSGGKAKALC 158
           Y +I+  Q+    + GD+LI +S SGNS NI  A ++A+++ + +   LG  GG+ K  C
Sbjct: 97  YKNIFERQVEAFGKEGDVLIGISTSGNSENITLAFKKAKEIGITTIGFLGKDGGENKNYC 156

Query: 159 DIPIHFAVDDMQIAEDMQVIVGHMV 183
           D P+    +D    ++  +++GH+V
Sbjct: 157 DFPLIVPSEDTPRVQEAHIMIGHIV 181


>mll2561 Non COG
          Length = 190

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 94/178 (52%), Gaps = 5/178 (2%)

Query: 8   VTAFQDYAARLQAVLAG---SDWSG-VGRLAQHMQQCWLQGRQVFLCGNGGSAGNAIHLA 63
           ++   DY  R  A +      D +G + R A  +      G+ + + GNGGSA +AIH+A
Sbjct: 1   MSELNDYLVRSAAAITAMVERDLTGEMERAASAVVTALSSGKALLIAGNGGSASDAIHIA 60

Query: 64  NDFLYGIAKRTGGGMRVSALSANAAVLTCLANDIGYDHIYSEQLAVQAQPGDLLIALSGS 123
            + L G   +      V AL ANAAVLT   ND G+D ++S Q+      G +L+A+S S
Sbjct: 61  GE-LVGRFLKERKAYNVIALPANAAVLTAWGNDYGFDTVFSRQVEAHGTAGGVLLAISTS 119

Query: 124 GNSANILRALEQARKMDVISCAILGYSGGKAKALCDIPIHFAVDDMQIAEDMQVIVGH 181
           GNS +IL A EQAR MD+    + G +GGK K LCDI ++       I +   + + H
Sbjct: 120 GNSPSILAAAEQARMMDMTVIGLTGDTGGKLKPLCDILLNVPSTSTPIIQQGHLCLYH 177


>FN0502 [G] COG0279 Phosphoheptose isomerase Fnu Fusobacterium nucleatum
          Length = 194

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 81/128 (63%), Gaps = 4/128 (3%)

Query: 33  LAQHMQQCWLQGRQVFLCGNGGSAGNAIHLANDFLYGIAKRTGGGMRVSALS-ANAAVLT 91
           +AQ +   + +G++V +CGNGGS  +A+H   +F     K       + A+S ++ + +T
Sbjct: 30  VAQKLANIFTKGKKVLICGNGGSNCDAMHFIEEFTGRFRKERRA---LPAISISDPSHIT 86

Query: 92  CLANDIGYDHIYSEQLAVQAQPGDLLIALSGSGNSANILRALEQARKMDVISCAILGYSG 151
           C+AND G+++I+S+ +    Q GD+ I +S SGNS N+++A+EQA+   +++  +LG  G
Sbjct: 87  CVANDYGFEYIFSKGVEAYGQEGDMFIGISTSGNSPNVIKAVEQAKAQGLVTVGLLGKDG 146

Query: 152 GKAKALCD 159
           GK K +CD
Sbjct: 147 GKLKGMCD 154


>jhp0791 [G] COG0279 Phosphoheptose isomerase jHp Helicobacter pylori J99
          Length = 192

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 83/138 (60%), Gaps = 1/138 (0%)

Query: 46  QVFLCGNGGSAGNAIHLANDFLYGIAKRTGGGMRVSALSANAAVLTCLANDIGYDHIYSE 105
           ++ +CGNGGSA +A H A + L G  K    G+ V +LS + + LT +AND GY+ +++ 
Sbjct: 44  KILICGNGGSASDAQHFAAE-LTGRYKLERKGLSVISLSTDTSALTAIANDYGYEEVFAR 102

Query: 106 QLAVQAQPGDLLIALSGSGNSANILRALEQARKMDVISCAILGYSGGKAKALCDIPIHFA 165
           Q+       D+LI +S SGNS N+L+A E+A+ + + + ++ G  GGK K L DI +   
Sbjct: 103 QVEALGNKEDILIGISTSGNSKNVLKAYEKAKDLGMKTLSLAGRDGGKMKPLSDIALIVP 162

Query: 166 VDDMQIAEDMQVIVGHMV 183
             D    ++M +++ H++
Sbjct: 163 SGDTPRIQEMHILMIHIL 180


>Cj1424c [G] COG0279 Phosphoheptose isomerase Cje Campylobacter jejuni
          Length = 201

 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 85/151 (56%), Gaps = 1/151 (0%)

Query: 39  QCWLQGRQVFLCGNGGSAGNAIHLANDFLYGIAKRTGGGMRVSALSANAAVLTCLANDIG 98
           + +  G +  L GNGGSA +A H+A +F+        G   + AL+ + ++LT + ND G
Sbjct: 41  KAYKNGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASI-ALTTDTSILTAIGNDYG 99

Query: 99  YDHIYSEQLAVQAQPGDLLIALSGSGNSANILRALEQARKMDVISCAILGYSGGKAKALC 158
           Y+++++ Q+  Q   GD+ I +S SGNS NIL+ALE  ++ ++IS  + G SGG    LC
Sbjct: 100 YENLFARQVQAQGVKGDVFIGISTSGNSKNILKALEFCKQKEIISIGLSGASGGAMNELC 159

Query: 159 DIPIHFAVDDMQIAEDMQVIVGHMVMQWLYE 189
           D  I          ++  +++GH++   + E
Sbjct: 160 DYCIKVPSTCTPRIQEAHILIGHIICAIVEE 190