BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4224.p (177 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3320 [C] COG0712 F0F1-type ATP synthase, delta subunit (mitoc... 221 4e-58 VC2767 [C] COG0712 F0F1-type ATP synthase, delta subunit (mitoch... 123 3e-28 PA5557 [C] COG0712 F0F1-type ATP synthase, delta subunit (mitoch... 116 3e-26 YPO4124 [C] COG0712 F0F1-type ATP synthase, delta subunit (mitoc... 107 9e-24 atpH [C] COG0712 F0F1-type ATP synthase, delta subunit (mitochon... 107 2e-23 >RSc3320 [C] COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Rso Ralstonia solanacearum Length = 178 Score = 221 bits (564), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 109/177 (61%), Positives = 139/177 (78%) Query: 1 MAELATIARPYAEALFRVAKAGSLAAWSDLIDEMAQVAAHPEVQALAQNPSVTHDKLAEV 60 MAELAT+ARPYAEALFRVAKAG+L AWS+L+ EM Q+AA P+++A+A +P ++ +A + Sbjct: 1 MAELATVARPYAEALFRVAKAGNLGAWSELVSEMGQIAAVPDMKAVADDPKLSKADVAGI 60 Query: 61 FAAAVKTPLSVEATNFVKTLVDNGRLVLLPQIAEQFHVLKNTAEGSADANIVSAFELSDA 120 F +A+K+P+S EA V LV N RL LLP+IA QFHVL+N +EG+AD I SAF L A Sbjct: 61 FLSALKSPVSHEAKELVGLLVANKRLSLLPEIAAQFHVLRNASEGAADVEITSAFPLEGA 120 Query: 121 QVKDVVSALEKKFGRKLNPSVTVDSSLIGGVRVVVGDEVFDTSVRAKLQQLQAALAA 177 + D+V+ LE+KFG+KL P VTVD SLIGGVRV VGDEV DTSVRA+L Q+Q+AL A Sbjct: 121 PLTDLVATLERKFGKKLQPHVTVDPSLIGGVRVQVGDEVLDTSVRARLAQMQSALTA 177 >VC2767 [C] COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Vch Vibrio cholerae Length = 177 Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 103/176 (58%), Gaps = 2/176 (1%) Query: 1 MAELATIARPYAEALFRVA-KAGSLAAWSDLIDEMAQVAAHPEVQALAQNPSVTHDKLAE 59 M++L TIARPYA+A F A + L WS ++ A+VA + ++ L S + +KLAE Sbjct: 1 MSDLTTIARPYAKAAFDFAVEKQQLGHWSQMLAFTAEVAKNEQMHELL-TSSGSANKLAE 59 Query: 60 VFAAAVKTPLSVEATNFVKTLVDNGRLVLLPQIAEQFHVLKNTAEGSADANIVSAFELSD 119 +F A L N +K + +NGRL+ +P + E F VLK E D ++SA ELS+ Sbjct: 60 IFIAVCGEQLDGHGQNLIKVMAENGRLLAIPALYEHFAVLKQEHEKKVDVEVISATELSE 119 Query: 120 AQVKDVVSALEKKFGRKLNPSVTVDSSLIGGVRVVVGDEVFDTSVRAKLQQLQAAL 175 Q ++ S LE++ RK+ + +VD +L+GGV + GD V D S R +L++L AL Sbjct: 120 QQRSEIGSKLEQRLERKVQLNCSVDETLLGGVIIRAGDLVIDNSARGRLKRLSDAL 175 >PA5557 [C] COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Pae Pseudomonas aeruginosa Length = 178 Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/176 (40%), Positives = 97/176 (55%), Gaps = 1/176 (0%) Query: 1 MAELATIARPYAEALFRVAKAGS-LAAWSDLIDEMAQVAAHPEVQALAQNPSVTHDKLAE 59 MAEL T+ARPYA+A F A+A LA WS + +A V+ V+ L + P +T A+ Sbjct: 1 MAELTTLARPYAKAAFEYAQAHQQLADWSAALGVLAAVSQDDTVRQLLKEPQLTSSAKAQ 60 Query: 60 VFAAAVKTPLSVEATNFVKTLVDNGRLVLLPQIAEQFHVLKNTAEGSADANIVSAFELSD 119 L+ A NFV+T+ +N RL LLP IAE + LK E S + + SAF LS Sbjct: 61 SLIDVCGDKLNAPAQNFVRTVAENKRLELLPTIAEMYEQLKAEQEKSVEVEVTSAFTLSK 120 Query: 120 AQVKDVVSALEKKFGRKLNPSVTVDSSLIGGVRVVVGDEVFDTSVRAKLQQLQAAL 175 Q + AL + R++ + D+SLIGGV + GD V D SVR KL +L AL Sbjct: 121 EQQDKLAKALSARLSREVRLHASEDASLIGGVIIRAGDLVIDGSVRGKLAKLAEAL 176 >YPO4124 [C] COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Ype Yersinia pestis Length = 177 Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 102/172 (59%), Gaps = 2/172 (1%) Query: 1 MAELATIARPYAEALFRVA-KAGSLAAWSDLIDEMAQVAAHPEVQALAQNPSVTHDKLAE 59 M+E T+ARPYA+A F A + ++ W +++ AQV + ++ L + +V + ++ Sbjct: 1 MSEFVTVARPYAKAAFDFAVEHQAVERWQNMLAFTAQVTRNEQIAELL-SGAVAPETMST 59 Query: 60 VFAAAVKTPLSVEATNFVKTLVDNGRLVLLPQIAEQFHVLKNTAEGSADANIVSAFELSD 119 F A L A NF++ + +NGRL++LP++ +QF L+ + E + D + SA L+D Sbjct: 60 TFIAVCGDQLDEPAQNFIRVMAENGRLLVLPEVLQQFIQLRASLESTVDVEVSSARALND 119 Query: 120 AQVKDVVSALEKKFGRKLNPSVTVDSSLIGGVRVVVGDEVFDTSVRAKLQQL 171 Q+ + +A+EK+ RK+ + +D S++ GV + GD V D SVR +L++L Sbjct: 120 EQLAKIAAAMEKRLSRKVKLNCKIDKSVMAGVVIRAGDMVIDGSVRGRLERL 171 >atpH [C] COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Eco Escherichia coli K12 Length = 177 Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 101/172 (58%), Gaps = 2/172 (1%) Query: 1 MAELATIARPYAEALFRVA-KAGSLAAWSDLIDEMAQVAAHPEVQALAQNPSVTHDKLAE 59 M+E T+ARPYA+A F A + S+ W D++ A+V + ++ L + ++ + LAE Sbjct: 1 MSEFITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELL-SGALAPETLAE 59 Query: 60 VFAAAVKTPLSVEATNFVKTLVDNGRLVLLPQIAEQFHVLKNTAEGSADANIVSAFELSD 119 F A L N ++ + +NGRL LP + EQF L+ +E +A+ +++SA LS+ Sbjct: 60 SFIAVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSE 119 Query: 120 AQVKDVVSALEKKFGRKLNPSVTVDSSLIGGVRVVVGDEVFDTSVRAKLQQL 171 Q+ + +A+EK+ RK+ + +D S++ GV + GD V D SVR +L++L Sbjct: 120 QQLAKISAAMEKRLSRKVKLNCKIDKSVMAGVIIRAGDMVIDGSVRGRLERL 171