BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4221.p (466 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3317 [C] COG0055 F0F1-type ATP synthase, beta subunit Rso Ral... 800 0.0 NMB1934 [C] COG0055 F0F1-type ATP synthase, beta subunit Nme Nei... 790 0.0 NMA0519 [C] COG0055 F0F1-type ATP synthase, beta subunit NmA Nei... 786 0.0 HI0479 [C] COG0055 F0F1-type ATP synthase, beta subunit Hin Haem... 770 0.0 STM3865 [C] COG0055 F0F1-type ATP synthase, beta subunit Sty Sal... 766 0.0 >RSc3317 [C] COG0055 F0F1-type ATP synthase, beta subunit Rso Ralstonia solanacearum Length = 467 Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/474 (82%), Positives = 425/474 (89%), Gaps = 15/474 (3%) Query: 1 MADGKIVQCIGAVVDVEFPRDAMPKVYDALKLEGSD--------LTLEVQQQLGDGVVRT 52 M+ G IVQCIGAVVD++FPRDAMPKVYDAL L+ S L+ EVQQQLGDGVVRT Sbjct: 1 MSIGTIVQCIGAVVDIQFPRDAMPKVYDALVLQDSGEASFAEKGLSFEVQQQLGDGVVRT 60 Query: 53 IALGSSDGLRRGLTISNTGKPITVPVGTATLGRIMDVLGNPIDECGPVSHEQTASIHRKA 112 IALGSSDGLRRG+ +SNTG PI+VPVG TLGRIMDVLG PIDE GP++ ++ +IH+KA Sbjct: 61 IALGSSDGLRRGMPVSNTGAPISVPVGHGTLGRIMDVLGRPIDEAGPIAADEKRAIHQKA 120 Query: 113 PAYDELSPSQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGL 172 P +DELSPS +LLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAK HSGL Sbjct: 121 PKFDELSPSVDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKQHSGL 180 Query: 173 SVFAGVGERTREGNDFYHEMAEAKVVDLENPTNSKVAMVYGQMNEPPGNRLRVALTGLTI 232 SVFAGVGERTREGNDFYHEM ++ V+D KVAMV+GQMNEPPGNRLRVALTGLT+ Sbjct: 181 SVFAGVGERTREGNDFYHEMKDSNVLD-------KVAMVFGQMNEPPGNRLRVALTGLTM 233 Query: 233 AEGFRDEGKDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTK 292 AE FRDEG+D+LFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMG+LQERITSTK Sbjct: 234 AERFRDEGRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTK 293 Query: 293 TGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDP 352 TGSITSIQAVYVPADDLTDPSPATTF HLDSTVVLSRDIA+LGIYPAVDPLDSTSRQLDP Sbjct: 294 TGSITSIQAVYVPADDLTDPSPATTFLHLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDP 353 Query: 353 QVVGQEHYETARAVQGTLQRYKELRDIIAILGMDELAPEDKLIVARARKMQRFLSQPFHV 412 Q+VG EHYE AR VQ TLQRYKELRDIIAILGMDEL+PEDKL V RARK+QRFLSQPFHV Sbjct: 354 QIVGTEHYEVARRVQQTLQRYKELRDIIAILGMDELSPEDKLAVGRARKIQRFLSQPFHV 413 Query: 413 AEVFTGSPGKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIDEAIEKAKKIN 466 AEVFTGSPGKYV LK+TI+GFKM+ GE DHLPEQAFYMVG+IDEA EKAKK+ Sbjct: 414 AEVFTGSPGKYVPLKETIRGFKMLVDGECDHLPEQAFYMVGSIDEAFEKAKKLQ 467 >NMB1934 [C] COG0055 F0F1-type ATP synthase, beta subunit Nme Neisseria meningitidis MC58 Length = 465 Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/472 (81%), Positives = 425/472 (90%), Gaps = 13/472 (2%) Query: 1 MADGKIVQCIGAVVDVEFPRDAMPKVYDALKLEGSDLTLEVQQQLGDGVVRTIALGSSDG 60 M+ GKIVQ IGAVVDVEFPRD +P+VYDALKL+ + LTLEVQQ LGDGVVR IA+GSSDG Sbjct: 1 MSQGKIVQIIGAVVDVEFPRDMIPRVYDALKLDENGLTLEVQQLLGDGVVRAIAMGSSDG 60 Query: 61 LRRGLTISNTGKPITVPVGTATLGRIMDVLGNPIDECGPVSHEQTASIHRKAPAYDELSP 120 L+RG+T+SNTG PITVPVG TLGRI+DVLG P+DE GP+ +++ +IH+ AP +DELS Sbjct: 61 LKRGMTVSNTGAPITVPVGKGTLGRIVDVLGTPVDEAGPIDTDKSRAIHQAAPKFDELSS 120 Query: 121 SQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 + ELLETGIKVIDL+CPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE Sbjct: 121 TTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 Query: 181 RTREGNDFYHEMAEAKVVDLENPTNSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRDE- 239 RTREGNDFYHEM ++ V+D KVAMVYGQMNEPPGNRLRVALTGLT+AE FRDE Sbjct: 181 RTREGNDFYHEMKDSNVLD-------KVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEK 233 Query: 240 -----GKDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTG 294 G+DVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITST+TG Sbjct: 234 DENGKGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTQTG 293 Query: 295 SITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQV 354 SITSIQAVYVPADDLTDPSPATTFAHLD+TVVLSRDIASLGIYPAVDPLDSTSRQLDP V Sbjct: 294 SITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPMV 353 Query: 355 VGQEHYETARAVQGTLQRYKELRDIIAILGMDELAPEDKLIVARARKMQRFLSQPFHVAE 414 +GQEHY+ AR VQ TLQ+YKELRDIIAILGMDEL+ EDKL V RARK+QRFLSQPFHVAE Sbjct: 354 LGQEHYDVARGVQSTLQKYKELRDIIAILGMDELSDEDKLTVMRARKIQRFLSQPFHVAE 413 Query: 415 VFTGSPGKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIDEAIEKAKKIN 466 VFTGSPGKYV+L+DTI GFK I +GE DHLPEQAFYMVG+I+EA+EKAK +N Sbjct: 414 VFTGSPGKYVALRDTIAGFKAILNGEYDHLPEQAFYMVGSIEEAVEKAKTLN 465 >NMA0519 [C] COG0055 F0F1-type ATP synthase, beta subunit NmA Neisseria meningitidis Z2491 Length = 465 Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/472 (81%), Positives = 425/472 (90%), Gaps = 13/472 (2%) Query: 1 MADGKIVQCIGAVVDVEFPRDAMPKVYDALKLEGSDLTLEVQQQLGDGVVRTIALGSSDG 60 M+ GKIVQ IGAVVDVEFPRD +P+VYDALKL+ + LTLEVQQ LGDGVVRTIA+GSSDG Sbjct: 1 MSQGKIVQIIGAVVDVEFPRDMIPRVYDALKLDENGLTLEVQQLLGDGVVRTIAMGSSDG 60 Query: 61 LRRGLTISNTGKPITVPVGTATLGRIMDVLGNPIDECGPVSHEQTASIHRKAPAYDELSP 120 L+RG+T+SNTG PITVPVG TLGRI+DVLG P+DE GP+ +++ +IH+ AP +DELS Sbjct: 61 LKRGMTVSNTGAPITVPVGKGTLGRIVDVLGTPVDEAGPIDTDKSRAIHQAAPKFDELSS 120 Query: 121 SQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 + ELLETGIKVIDL+CPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE Sbjct: 121 TTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 Query: 181 RTREGNDFYHEMAEAKVVDLENPTNSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRDE- 239 RTREGNDFYHEM ++ V+D KVAMVYGQMNEPPGNRLRVALTGLT+AE FRDE Sbjct: 181 RTREGNDFYHEMKDSNVLD-------KVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEK 233 Query: 240 -----GKDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTG 294 G+DVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMG LQERITST+TG Sbjct: 234 DENGKGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGCLQERITSTQTG 293 Query: 295 SITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQV 354 SITSIQAVYVPADDLTDPSPATTFAHLD+TVVLSRDIASLGIYPAVDPLDSTSRQLDP V Sbjct: 294 SITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPMV 353 Query: 355 VGQEHYETARAVQGTLQRYKELRDIIAILGMDELAPEDKLIVARARKMQRFLSQPFHVAE 414 +GQEHY+ AR VQ TLQ+YKELRDIIAILGMDEL+ EDKL V RARK+QRFLSQPFHVAE Sbjct: 354 LGQEHYDVARGVQSTLQKYKELRDIIAILGMDELSDEDKLTVMRARKIQRFLSQPFHVAE 413 Query: 415 VFTGSPGKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIDEAIEKAKKIN 466 VFTGSPGKYV+L+DTI GFK I +GE D+LPEQAFYMVG+I+EA+EKAK +N Sbjct: 414 VFTGSPGKYVALRDTIAGFKAILNGEYDYLPEQAFYMVGSIEEAVEKAKTLN 465 >HI0479 [C] COG0055 F0F1-type ATP synthase, beta subunit Hin Haemophilus influenzae Length = 457 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/465 (81%), Positives = 414/465 (89%), Gaps = 8/465 (1%) Query: 1 MADGKIVQCIGAVVDVEFPRDAMPKVYDALKLEGSDLTLEVQQQLGDGVVRTIALGSSDG 60 M+ GKIVQ IGAV+DVEFP+DA+PKVYDALK+E S LTLEVQQQLG GVVR IALG+SDG Sbjct: 1 MSAGKIVQIIGAVIDVEFPQDAVPKVYDALKVE-SGLTLEVQQQLGGGVVRCIALGTSDG 59 Query: 61 LRRGLTISNTGKPITVPVGTATLGRIMDVLGNPIDECGPVSHEQTASIHRKAPAYDELSP 120 L+RGL + NT PI VPVGT TLGRIM+VLG PIDE G + E+ +IHR AP+Y+E S Sbjct: 60 LKRGLKVENTNNPIQVPVGTKTLGRIMNVLGEPIDEQGAIGEEERWAIHRSAPSYEEQSN 119 Query: 121 SQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 S ELLETGIKVIDL+CPFAKGGKVGLFGGAGVGKTVNMMELI NIA HSG SVFAGVGE Sbjct: 120 STELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGE 179 Query: 181 RTREGNDFYHEMAEAKVVDLENPTNSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRDEG 240 RTREGNDFYHEM ++ V+D KV++VYGQMNEPPGNRLRVALTGLT+AE FRDEG Sbjct: 180 RTREGNDFYHEMKDSNVLD-------KVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEG 232 Query: 241 KDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTGSITSIQ 300 +DVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMG LQERITSTKTGSITS+Q Sbjct: 233 RDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQ 292 Query: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQVVGQEHY 360 AVYVPADDLTDPSPATTFAHLDSTVVLSR IASLGIYPAVDPLDSTSRQLDP VVGQEHY Sbjct: 293 AVYVPADDLTDPSPATTFAHLDSTVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHY 352 Query: 361 ETARAVQGTLQRYKELRDIIAILGMDELAPEDKLIVARARKMQRFLSQPFHVAEVFTGSP 420 + AR VQG LQRYKEL+DIIAILGMDEL+ EDKL+VARARK++RFLSQPF VAEVFTGSP Sbjct: 353 DVARGVQGILQRYKELKDIIAILGMDELSEEDKLVVARARKIERFLSQPFFVAEVFTGSP 412 Query: 421 GKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIDEAIEKAKKI 465 GKYV+LKDTI+GFK I GE DH+PEQAFYMVG+IDE +EKAK + Sbjct: 413 GKYVTLKDTIRGFKGILDGEYDHIPEQAFYMVGSIDEVLEKAKNM 457 >STM3865 [C] COG0055 F0F1-type ATP synthase, beta subunit Sty Salmonella typhimurium LT2 Length = 460 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/467 (80%), Positives = 415/467 (88%), Gaps = 9/467 (1%) Query: 1 MADGKIVQCIGAVVDVEFPRDAMPKVYDALKLEGSD--LTLEVQQQLGDGVVRTIALGSS 58 MA GKIVQ IGAVVDVEFP+DA+P+VYDAL+++ + L LEVQQQLG G+VRTIA+GSS Sbjct: 1 MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNEKLVLEVQQQLGGGIVRTIAMGSS 60 Query: 59 DGLRRGLTISNTGKPITVPVGTATLGRIMDVLGNPIDECGPVSHEQTASIHRKAPAYDEL 118 DGLRRGL + + PI VPVG ATLGRIM+VLG P+D G + E+ +IHR AP+Y+EL Sbjct: 61 DGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEEL 120 Query: 119 SPSQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGV 178 S SQELLETGIKVIDL+CPFAKGGKVGLFGGAGVGKTVNMMELI NIA HSG SVFAGV Sbjct: 121 SNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGV 180 Query: 179 GERTREGNDFYHEMAEAKVVDLENPTNSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRD 238 GERTREGNDFYHEM ++ V+D KV++VYGQMNEPPGNRLRVALTGLT+AE FRD Sbjct: 181 GERTREGNDFYHEMTDSNVID-------KVSLVYGQMNEPPGNRLRVALTGLTMAEKFRD 233 Query: 239 EGKDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTGSITS 298 EG+DVL FVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMG LQERITSTKTGSITS Sbjct: 234 EGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITS 293 Query: 299 IQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQVVGQE 358 +QAVYVPADDLTDPSPATTFAHLD+TVVLSR IASLGIYPAVDPLDSTSRQLDP VVGQE Sbjct: 294 VQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQE 353 Query: 359 HYETARAVQGTLQRYKELRDIIAILGMDELAPEDKLIVARARKMQRFLSQPFHVAEVFTG 418 HY+TAR VQ LQRY+EL+DIIAILGMDEL+ EDKL+VARARK+QRFLSQPF VAEVFTG Sbjct: 354 HYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFLSQPFFVAEVFTG 413 Query: 419 SPGKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIDEAIEKAKKI 465 SPGKYVSLKDTI+GFK I GE DHLPEQAFYMVG+IDEA+EKAKK+ Sbjct: 414 SPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSIDEAVEKAKKL 460