BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4197.p         (207 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll9010 Non COG                                                        34   0.25 
AGc1643_2 [L] COG0350 Methylated DNA-protein cysteine methyltran...    32   1.4  
PA5238 [I] COG1835 Predicted acyltransferases Pae Pseudomonas ae...    30   4.4  

>mll9010 Non COG
          Length = 457

 Score = 33.9 bits (76), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 45  KWAETAPMKLLA-----GHHSGFSTSLHIMLFRYAKKRDSPCAPRMNKSVNHLKHFCSAA 99
           +WA +A   +LA     G H+    ++ I  F +A + ++  APR  +S  +   FC A 
Sbjct: 261 RWAHSAIDAVLALKAEHGLHATEIQAIEIETFSWALRLNNEVAPRTTESAQYSVPFCVAM 320

Query: 100 ERPCTPVGVRRISNREAAQS 119
                   + +I+NR+ A S
Sbjct: 321 ALTKGAEALLQITNRDLADS 340


>AGc1643_2 [L] COG0350 Methylated DNA-protein cysteine methyltransferase Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 172

 Score = 31.6 bits (70), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 78  DSPCAPRMNKSVNHLKHFCSAAERPCTPVGVRRISNREAAQ 118
           D+P  P +  + +H  H    A+RP  P  ++R+  R  A 
Sbjct: 2   DTPIGPMLAVADDHALHLLEFADRPALPAELKRLKARTGAD 42


>PA5238 [I] COG1835 Predicted acyltransferases Pae Pseudomonas aeruginosa
          Length = 662

 Score = 29.6 bits (65), Expect = 4.4,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 11/130 (8%)

Query: 55  LAGHHSGFSTSLHIMLFRYAKK---RDSPCAPRMNKSVNHLKHFCS-----AAERPCTPV 106
           L  H+ G  + L     RYAK    RD       +K     +  C      AAERP    
Sbjct: 367 LVRHYDGVPSRLSEEALRYAKASKWRDGQTDCMFDKKALSQESICRFPAELAAERPLL-- 424

Query: 107 GVRRISNREAAQSPRLQKRCFTLAVPCNMSTMAGTIPAIRGYEAKRSVRGTRELHRQEEN 166
            V    +  AA SP L++   +  +P   +++AG  P +   E    +R  +++    E 
Sbjct: 425 -VSWGDSHSAALSPLLRELATSRRLPIWQASLAGCPPLLGMLEKDTCLRFNQQMLEFVEQ 483

Query: 167 GSIGKTSLSG 176
              G   L+G
Sbjct: 484 QRPGGVILAG 493