BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4196.p         (45 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0001 [J] COG0230 Ribosomal protein L34 Rso Ralstonia solanace...    77   1e-14
VC0007 [J] COG0230 Ribosomal protein L34 Vch Vibrio cholerae           70   2e-12
NMB1904 [J] COG0230 Ribosomal protein L34 Nme Neisseria meningit...    68   6e-12
NMA0551 [J] COG0230 Ribosomal protein L34 NmA Neisseria meningit...    68   6e-12
SMc04434 [J] COG0230 Ribosomal protein L34 Sme Sinorhizobium mel...    65   3e-11

>RSc0001 [J] COG0230 Ribosomal protein L34 Rso Ralstonia solanacearum
          Length = 44

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 40/43 (93%)

Query: 1  MKRTYQPSVVRRKRTHGFRARMATRGGRAVINARRAKGRKRLA 43
          MKRTYQPSV RRKRTHGFR RM TRGGRAV+NARRAKGRKRLA
Sbjct: 1  MKRTYQPSVTRRKRTHGFRVRMKTRGGRAVLNARRAKGRKRLA 43


>VC0007 [J] COG0230 Ribosomal protein L34 Vch Vibrio cholerae
          Length = 45

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/42 (80%), Positives = 39/42 (92%)

Query: 2  KRTYQPSVVRRKRTHGFRARMATRGGRAVINARRAKGRKRLA 43
          KRT+QPSV++RKRTHGFRARMAT  GR V+NARRAKGRKRL+
Sbjct: 3  KRTFQPSVLKRKRTHGFRARMATANGRKVLNARRAKGRKRLS 44


>NMB1904 [J] COG0230 Ribosomal protein L34 Nme Neisseria meningitidis MC58
          Length = 44

 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 37/43 (86%)

Query: 1  MKRTYQPSVVRRKRTHGFRARMATRGGRAVINARRAKGRKRLA 43
          MKRTYQPSV +RKRTHGF  R  TRGGRAV+ ARRAKGRKRLA
Sbjct: 1  MKRTYQPSVTKRKRTHGFLVRSKTRGGRAVLAARRAKGRKRLA 43


>NMA0551 [J] COG0230 Ribosomal protein L34 NmA Neisseria meningitidis
          Z2491
          Length = 44

 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 37/43 (86%)

Query: 1  MKRTYQPSVVRRKRTHGFRARMATRGGRAVINARRAKGRKRLA 43
          MKRTYQPSV +RKRTHGF  R  TRGGRAV+ ARRAKGRKRLA
Sbjct: 1  MKRTYQPSVTKRKRTHGFLVRSKTRGGRAVLAARRAKGRKRLA 43


>SMc04434 [J] COG0230 Ribosomal protein L34 Sme Sinorhizobium meliloti
          Length = 44

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 39/44 (88%)

Query: 1  MKRTYQPSVVRRKRTHGFRARMATRGGRAVINARRAKGRKRLAA 44
          MKRTYQPS + RKR HGFRARM+T+GGR V+ ARRA+GRKRL+A
Sbjct: 1  MKRTYQPSKLVRKRRHGFRARMSTKGGRKVLTARRARGRKRLSA 44