BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4185.p (308 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0618 Non COG 384 e-106 ZyaiD [L] COG2974 DNA recombination-dependent growth factor C Ec... 234 3e-61 ECs0445 [L] COG2974 DNA recombination-dependent growth factor C ... 234 3e-61 rdgC [L] COG2974 DNA recombination-dependent growth factor C Eco... 233 6e-61 STM0392 [L] COG2974 DNA recombination-dependent growth factor C ... 224 2e-58 >RSc0618 Non COG Length = 307 Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust. Identities = 178/295 (60%), Positives = 229/295 (77%) Query: 1 MWFKNLQIYRLPAPWAITADELESHLAPQAFTACSSLDMQSQGWVPPRNNDKLVHVVNRQ 60 MWFKNLQ++RLPAPWA+ D++E LAP AF +S++ Q GW PR++ LV+ +NRQ Sbjct: 1 MWFKNLQLHRLPAPWAVAPDQIEKWLAPHAFQPGNSVEKQCSGWASPRDDGALVYSINRQ 60 Query: 61 LLMKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFSVV 120 +L+ EKKLLP++V+NQVTKARA E+EEQQGF GRKQ +ELKEQVTDELLPRAF++ Sbjct: 61 MLLVFRAEKKLLPASVVNQVTKARALEVEEQQGFKLGRKQLRELKEQVTDELLPRAFTIR 120 Query: 121 RSTWVWIDPVNGWLLVDAGSPAKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLASD 180 R T VWID NGWL++DA + A ++V LL K+I + PL ++R +SP AAMTDWL S Sbjct: 121 RDTRVWIDTANGWLVIDAAAQALGDDVRGLLVKSIDQLPLASVRVALSPVAAMTDWLLSG 180 Query: 181 EAPNGFTVDQDTELRSTAESKATVRYVRHTLEAEDIRRHIESGKQCTRLALTWADKVSFV 240 EAP GFTVDQD ELRS+ E ATVRYV H LEA+D+RRHIE+GKQC RLA+TW +++SFV Sbjct: 181 EAPGGFTVDQDAELRSSGEGGATVRYVGHALEADDMRRHIEAGKQCVRLAMTWDNRISFV 240 Query: 241 LTENLSVKRIAPLDVLKEDSEIAGKNDDERFDGDFMLMAGELAKLLSALVDALGG 295 LT +L++KR+ PLDV+KE ++ +NDDERF+ D LM GEL ++L+ LVD LGG Sbjct: 241 LTPSLTIKRVTPLDVIKEAADPTAQNDDERFESDVALMTGELGRMLTDLVDILGG 295 >ZyaiD [L] COG2974 DNA recombination-dependent growth factor C EcZ Escherichia coli O157:H7 EDL933 Length = 303 Score = 234 bits (596), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 179/299 (59%), Gaps = 3/299 (1%) Query: 1 MWFKNLQIYRLPAPWAITADELESHLAPQAFTACSSLDMQSQGWVPP--RNNDKLVHVVN 58 +WFKNL +YRL ++ A+E+E LA AFT C S DM GWVPP ++D L HV N Sbjct: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 Query: 59 RQLLMKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFS 118 Q+++ E+K+LPS VI Q +A+ A+LE +Q + + LK++V LLPRAFS Sbjct: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 Query: 119 VVRSTWVWIDPVNGWLLVDAGSPAKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLA 178 T +WID VNG ++VD S KAE+ L LL K++ P+ L +T+W+ Sbjct: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMANPIELTLTEWVR 181 Query: 179 SDEAPNGFTVDQDTELRSTAESKATVRYVRHTLEAEDIRRHIESGKQCTRLALTWADKVS 238 S A GF + + EL+S E +R + L +E+I HIE+GK T+LAL W ++ Sbjct: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 Query: 239 FVLTENLSVKRIAPLDVLKEDSEIAGKND-DERFDGDFMLMAGELAKLLSALVDALGGQ 296 FV+ ++ S+KR+ D L++ +E + D +RFD DF+LM GELA L+ L++ LGG+ Sbjct: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 >ECs0445 [L] COG2974 DNA recombination-dependent growth factor C Ecs Escherichia coli O157:H7 Length = 303 Score = 234 bits (596), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 179/299 (59%), Gaps = 3/299 (1%) Query: 1 MWFKNLQIYRLPAPWAITADELESHLAPQAFTACSSLDMQSQGWVPP--RNNDKLVHVVN 58 +WFKNL +YRL ++ A+E+E LA AFT C S DM GWVPP ++D L HV N Sbjct: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 Query: 59 RQLLMKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFS 118 Q+++ E+K+LPS VI Q +A+ A+LE +Q + + LK++V LLPRAFS Sbjct: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 Query: 119 VVRSTWVWIDPVNGWLLVDAGSPAKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLA 178 T +WID VNG ++VD S KAE+ L LL K++ P+ L +T+W+ Sbjct: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMANPIELTLTEWVR 181 Query: 179 SDEAPNGFTVDQDTELRSTAESKATVRYVRHTLEAEDIRRHIESGKQCTRLALTWADKVS 238 S A GF + + EL+S E +R + L +E+I HIE+GK T+LAL W ++ Sbjct: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 Query: 239 FVLTENLSVKRIAPLDVLKEDSEIAGKND-DERFDGDFMLMAGELAKLLSALVDALGGQ 296 FV+ ++ S+KR+ D L++ +E + D +RFD DF+LM GELA L+ L++ LGG+ Sbjct: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 >rdgC [L] COG2974 DNA recombination-dependent growth factor C Eco Escherichia coli K12 Length = 303 Score = 233 bits (593), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 179/299 (59%), Gaps = 3/299 (1%) Query: 1 MWFKNLQIYRLPAPWAITADELESHLAPQAFTACSSLDMQSQGWVPP--RNNDKLVHVVN 58 +WFKNL +YRL ++ A+E+E LA AFT C S DM GWVPP ++D L HV N Sbjct: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 Query: 59 RQLLMKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFS 118 Q+++ E+K+LPS VI Q +A+ A+LE +Q + + LK++V LLPRAFS Sbjct: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 Query: 119 VVRSTWVWIDPVNGWLLVDAGSPAKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLA 178 T +WID VNG ++VD S KAE+ L LL K++ P+ L +T+W+ Sbjct: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 Query: 179 SDEAPNGFTVDQDTELRSTAESKATVRYVRHTLEAEDIRRHIESGKQCTRLALTWADKVS 238 S A GF + + EL+S E +R + L +E+I HIE+GK T+LAL W ++ Sbjct: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 Query: 239 FVLTENLSVKRIAPLDVLKEDSEIAGKND-DERFDGDFMLMAGELAKLLSALVDALGGQ 296 FV+ ++ S+KR+ D L++ +E + D +RFD DF+LM GELA L+ L++ LGG+ Sbjct: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 >STM0392 [L] COG2974 DNA recombination-dependent growth factor C Sty Salmonella typhimurium LT2 Length = 303 Score = 224 bits (572), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 118/299 (39%), Positives = 175/299 (58%), Gaps = 3/299 (1%) Query: 1 MWFKNLQIYRLPAPWAITADELESHLAPQAFTACSSLDMQSQGWVPP--RNNDKLVHVVN 58 +WFKNL +YRL + A+E+E LA FT C S DM GWVPP ++D L H N Sbjct: 2 LWFKNLMVYRLSRDITLRAEEMEKQLASMTFTPCGSQDMAKMGWVPPMGSHSDALTHTAN 61 Query: 59 RQLLMKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFS 118 Q+++ E+K+LPS VI Q +A+ +LE QG + + LK++V LLPRAFS Sbjct: 62 GQIIICARKEEKILPSPVIKQALEAKIQKLEADQGRKLKKTEKDSLKDEVLHSLLPRAFS 121 Query: 119 VVRSTWVWIDPVNGWLLVDAGSPAKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLA 178 T +WID VNG ++VD S KAE+ L LL K++ P+ L +T+W+ Sbjct: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLALENPIELTLTEWVR 181 Query: 179 SDEAPNGFTVDQDTELRSTAESKATVRYVRHTLEAEDIRRHIESGKQCTRLALTWADKVS 238 S GF + + EL++ E +R + L +++I HIE+GK T+LAL W ++ Sbjct: 182 SGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDEIAVHIEAGKVVTKLALDWQQRIQ 241 Query: 239 FVLTENLSVKRIAPLDVLKEDSEIAGKND-DERFDGDFMLMAGELAKLLSALVDALGGQ 296 FV+ ++ S+KR+ D L++ +E + D +RFD DF+LM GELA L+ +LV+ LGG+ Sbjct: 242 FVMCDDGSIKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQSLVEGLGGE 300