BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4184.p (251 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0858 [K] COG2186 Transcriptional regulators Bme Brucella me... 147 2e-35 PM1764 [K] COG2186 Transcriptional regulators Pmu Pasteurella mu... 89 9e-18 CC2813 Non COG 75 2e-13 Cgl2598 [K] COG2186 Transcriptional regulators Cgl Corynebacteri... 75 2e-13 AGl3267 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 68 2e-11 >BMEII0858 [K] COG2186 Transcriptional regulators Bme Brucella melitensis Length = 242 Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 119/206 (57%), Gaps = 1/206 (0%) Query: 11 AQAQIKRFIEERGLTLGDALPPEGMLAEELGMSRPSLREAVKSLESLGILESRHGEGIYV 70 Q ++ +IE+ GL G LPPEG LA LG+SR S+REA+K+LES+G+LESR G G++V Sbjct: 18 VQESLRAYIEDNGLQAGAPLPPEGELAARLGVSRNSVREAIKALESVGVLESRRGIGVFV 77 Query: 71 KGFSFDTILDNLPYAFAADGKQLRELLQVRAAIETGAAPAILQHMSAAQLKTLRQQADHM 130 K FSF+ +L+NL Y +Q+ E++ +R A+E G L+ + +K LR + M Sbjct: 78 KAFSFEPLLENLAYGLGGALRQIEEVIAIRRALEIGLIDKTLERIGEDDIKELRDTLEKM 137 Query: 131 LVLARSGEEVGEEDRQFQATLYGCLDNAFLSTLTDLLWRMFQRMGEARLALDGRLAEATA 190 A GE EEDR F L+ C DN L L ++ W F + + + L+ AT Sbjct: 138 RQRAERGEGFPEEDRHFHQLLFRCQDNEVLLRLIEVFWLAFYKASDF-VNLENIDPMATW 196 Query: 191 RDRIQLAKMIEAKDLEGLLQACEKHF 216 RD + + IEA+D+ + + ++H+ Sbjct: 197 RDHVAIVDAIEARDVVAVRKQLDRHY 222 >PM1764 [K] COG2186 Transcriptional regulators Pmu Pasteurella multocida Length = 235 Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 107/210 (50%), Gaps = 5/210 (2%) Query: 12 QAQIKRFIEERGLTLGDALPPEGMLAEELGMSRPSLREAVKSLESLGILESRHGEGIYVK 71 Q +IK I R + GD +P E L + G+SR SLREA+KSLE+L IL+ HG G +V Sbjct: 14 QEKIKTLIIRRKMKSGDLMPTENELIDLFGVSRSSLREAIKSLEALHILDIHHGIGTFVG 73 Query: 72 GFSFDTILDNLPYA----FAADGKQLRELLQVRAAIETGAAPAILQHMSAAQLKTLRQQA 127 S ++ L + + K + ++L VR ++ G AP LQ ++A ++ L+ Sbjct: 74 TSSLIPMIRGLTFYAQLHLQDNLKSILDILDVREILQYGFAPIALQKINAEEVLQLQSLV 133 Query: 128 DHMLVLARSGEEVGEEDRQFQATLYGCLDNAFLSTLTDLLWRMFQRMGEARLALDGRLAE 187 + A+ G +E++Q +Y + N L+ D W+++Q++ A+ + Sbjct: 134 RLLEENAQQGRFSIKEEQQIHLLMYQSVQNHLLTQYLDAFWQIYQQLDAELPAILISPTD 193 Query: 188 ATARDRIQLAKMIEAKDLEGLLQACEKHFQ 217 + R + IEA+DLE + +A +FQ Sbjct: 194 LAMQYR-EWVDAIEARDLERVQRAVLYYFQ 222 >CC2813 Non COG Length = 249 Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 109/237 (45%), Gaps = 31/237 (13%) Query: 1 MTARIPAYRLAQAQIKRFIEERGLTLGDALPPEGMLAEELGMSRPSLREAVKSLESLGIL 60 M+ + YR + IE LGD LP E LAE+ G+SRP+LREA+ +LE LG++ Sbjct: 1 MSDNVKLYRKIADSVADDIEAGRYRLGDRLPTERELAEQFGVSRPTLREAMIALEMLGMI 60 Query: 61 ESRHGEGIYV----KGFSFDTILDNLPYAFAADGKQLRELLQVRAAIETGAAPAILQHMS 116 E+RHG GIYV + + +D AF EL++ R E AA ++ Sbjct: 61 EARHGLGIYVTATARPLAPSPEIDFEIGAF--------ELIEARRLFEGEAAALAATSIT 112 Query: 117 AAQLKTLRQQADHMLVLARSGEEV-GEE-DRQFQATLYGCLDNAFLSTLTDLLWRMFQRM 174 Q+ L + +L EE+ GE+ DR+F T+ N + + LW R Sbjct: 113 DEQIAAL----EGLLTRMHEEEEIRGEDADREFHLTIARATGNGAIIATIETLWDWRNRS 168 Query: 175 GEAR--------LALDGRLAEATARDRIQLAKMIEAKDLEGLLQACEKHFQRLLAQL 223 AR + L+ R+AE ++ ++A+D QA H +R++ L Sbjct: 169 PLARNILARARGMGLEPRIAEHR-----RVVDALKARDPAAARQAMRDHLERVIDHL 220 >Cgl2598 [K] COG2186 Transcriptional regulators Cgl Corynebacterium glutamicum Length = 240 Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 4/164 (2%) Query: 11 AQAQIKRFIEERGLTLGDALPPEGMLAEELGMSRPSLREAVKSLESLGILESRHGEGIYV 70 A IK++I + L GD LP E L EELG SR ++REA+++L +L I+E RHG G +V Sbjct: 17 AVRDIKKYIRDNRLRTGDLLPSEAFLCEELGCSRSAIREAIRALVTLDIVEVRHGYGTFV 76 Query: 71 KGFSFDTILDNLPYAFAADG----KQLRELLQVRAAIETGAAPAILQHMSAAQLKTLRQQ 126 S + +++ + + D + L ++ R ++ +++ + + L Sbjct: 77 SRMSLEPLINGMVFRTVLDNDTSVENLFYVVDTREILDLSLGEELIEVFTDDDRELLLDL 136 Query: 127 ADHMLVLARSGEEVGEEDRQFQATLYGCLDNAFLSTLTDLLWRM 170 D M GE ED++F L N + L D W++ Sbjct: 137 VDKMREHNDQGESFVVEDQKFHRALLARTKNPLIRELNDAFWQI 180 >AGl3267 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 238 Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 9/171 (5%) Query: 9 RLAQAQIKRFIEERGLTLGDALPPEGMLAEELGMSRPSLREAVKSLESLGILESRHGEGI 68 R +A + ++E GL G+ LP E L LG+ R ++RE ++ ++LG+++SR G G Sbjct: 19 RQVEAALSDYVERAGLKAGERLPAERELMAALGVGRSTIREVIRKFQALGVIDSRKGSGN 78 Query: 69 Y-VKGFSFDTILDNLPYAFAADGKQLRE----LLQVRAAIETGAAPAILQHMSAAQLKTL 123 Y +K S T+ ++P + D + LR+ L+VR IE A+ A + +A + T+ Sbjct: 79 YLLKPISAATV--HMPISI--DAESLRDALLMTLEVRRGIEVEASMAAARRRTADDIATM 134 Query: 124 RQQADHMLVLARSGEEVGEEDRQFQATLYGCLDNAFLSTLTDLLWRMFQRM 174 + D M + + G+ D F ++Y N+ L + + F+R Sbjct: 135 EARLDEMERVHLAEGTSGKADLAFHLSIYDATHNSLFKQLLEQMREGFERF 185