BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4170.p         (161 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF1093 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotra...   105   5e-23
PH0066 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotra...    75   7e-14
PAB2294 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotr...    65   5e-11
STM1294 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotr...    59   6e-09
Cj0029 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotra...    57   1e-08

>XF1093 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase
           subunit D Xfa Xylella fastidiosa 9a5c
          Length = 161

 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 85/159 (53%), Gaps = 1/159 (0%)

Query: 3   LRIIATGGTFDKHYDEIAGQLGFDQSHLPDVIARARITTEVCLETLRLLDSLEMQDADRQ 62
           L I+ TGGT DK Y +           +  ++    I     +  +   DSL M +ADR+
Sbjct: 4   LLIVTTGGTIDKIYFDEKSHYQVGDPQITQILEALGIAFRFNVIPIMRKDSLHMVEADRE 63

Query: 63  RVLQACQASPQQAIVIVHGTDTMQQTAQVLGPALSDKTVVLTGAMIPYEIANSDALFNFG 122
            +     A P Q +++ HGTD+M +T + L  ++ +KT+V+TGA+ P     SDA FN G
Sbjct: 64  LIHNTITAHPCQHVLMTHGTDSMVETGKRL-QSIQNKTIVITGALNPARFHGSDAHFNIG 122

Query: 123 FACGVAQVLPPGVYVAMNGRIFAWNKVAKNRSAGVFEPI 161
            A G  Q L  GVY+AMNGRI+  NKV KN     FE I
Sbjct: 123 CAIGALQSLSSGVYIAMNGRIWHPNKVRKNIIKNCFETI 161


>PH0066 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase
           subunit D Pho Pyrococcus horikoshii
          Length = 328

 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 13/170 (7%)

Query: 1   MSLRIIATGGTFDKHYDEIAGQLGFDQS-HLPDVIARARITTEVCLETLRLL--DSLEMQ 57
           M + I+  GGT       + G+ G++ +  +  ++  A I++E  +E   L+  DS  +Q
Sbjct: 1   MRILILGMGGTIA----SVKGERGYESALSVSKILKLAGISSEAKIEARDLMNVDSTLIQ 56

Query: 58  DADRQRVLQACQASPQQ--AIVIVHGTDTMQQTAQVLGPALSDKTV--VLTGAMIPYEIA 113
            +D +R+ +  +    +   IVI HGTDTM  +A +L   L +  +  VLTG+M+P    
Sbjct: 57  PSDWERLAKEIEKEVWEYDGIVITHGTDTMAYSASMLSFMLRNPPIPIVLTGSMLPITEK 116

Query: 114 NSDALFNFGFACGVAQVLPPGVYVAMNGRIFAWNKVAKNRSAG--VFEPI 161
           NSDA FN   A    ++   G+Y+A NG++    + +K RS G   FE I
Sbjct: 117 NSDAPFNLRTALEFVKLGIRGIYIAFNGKVMLGVRASKIRSMGFDAFESI 166


>PAB2294 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase
           subunit D Pab Pyrococcus abyssi
          Length = 340

 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 15/172 (8%)

Query: 1   MSLRIIATGGTFDKHYDEIAGQLGFDQSHLPDVIA-----RARITTEVCLETLRLLDSLE 55
           MSL II  GGT       + G+ G++ +   + I      R +I + +    L  +DS  
Sbjct: 12  MSLLIIGMGGTIAS----VKGESGYESALSIEEIIEISGIREKIGSSIDTIDLMNVDSTL 67

Query: 56  MQDADRQRVLQACQAS--PQQAIVIVHGTDTMQQTAQVLGPALSDKTV--VLTGAMIPYE 111
           +Q +D + + +  + +      IVI HGTDTM  TA +L   L +  V  V TG+M+P  
Sbjct: 68  IQPSDWKTLAEEIERNIWDYDGIVITHGTDTMAYTASMLSFMLRNPPVPIVFTGSMLPAS 127

Query: 112 IANSDALFNFGFACGVAQVLPPGVYVAMNGRIFAWNKVAKNRSAG--VFEPI 161
             NSDA  N   A   A+    G+Y+A NG++    + +K RS     FE I
Sbjct: 128 EKNSDAPLNLYTALKFAETGIRGIYIAFNGKVMLGVRASKVRSMNFDAFESI 179


>STM1294 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase
           subunit D Sty Salmonella typhimurium LT2
          Length = 338

 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 74/165 (44%), Gaps = 11/165 (6%)

Query: 2   SLRIIATGGTF-----DKHYDEIAGQLGFDQSHLPDVIARARITTEVCLETLRLLDSLEM 56
           S+ +  TGGT      DK Y  ++G L    + +P+   R  +      E   L+DS +M
Sbjct: 5   SIYVAYTGGTIGMQRSDKGYIPVSGHLQRQLALMPE-FHRPEMPDFTIHEYAPLMDSSDM 63

Query: 57  QDADRQRVLQACQASPQQ--AIVIVHGTDTMQQTAQVLGPALSD--KTVVLTGAMIPYEI 112
              D Q +    +A   +    VI+HGTDTM  TA  L   L +  K V++TG+ IP   
Sbjct: 64  TPEDWQHIAADIKAHYDEYDGFVILHGTDTMAFTASALSFMLENLGKPVIVTGSQIPLAE 123

Query: 113 ANSDALFNFGFACGVAQVLPPG-VYVAMNGRIFAWNKVAKNRSAG 156
             SD   N   A  VA   P   V +  N R+F  N+  K  + G
Sbjct: 124 LRSDGQINLLNALYVAANYPINEVTLFFNNRLFRGNRTTKAHADG 168


>Cj0029 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase
           subunit D Cje Campylobacter jejuni
          Length = 331

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 75/167 (44%), Gaps = 12/167 (7%)

Query: 3   LRIIATGGTFDKHYDEIAGQLGFDQSHLP-DVIARA----RITTEVCLETLRLLDSLEMQ 57
           + I+ TGGT     D      G+    +  DV+ +A    R   ++  E +  +DS  M 
Sbjct: 8   IAILGTGGTIAGFIDSTIATTGYAAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMC 67

Query: 58  DADRQRVLQACQ---ASPQQAIVIVHGTDTMQQTAQVLGPAL-SDKTVVLTGAMIPYEIA 113
           D    R+ +      A     +VI HGTDTM++TA  L   + SDK VVL GAM P    
Sbjct: 68  DEIWLRLAKKIAKLFAEGIDGVVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAI 127

Query: 114 NSDALFNFGFACGVA---QVLPPGVYVAMNGRIFAWNKVAKNRSAGV 157
           ++D   N   A  +    +    GV VA+N +I +   V K  S  V
Sbjct: 128 SADGPKNLYNAVALVVNKEAKNKGVMVAINDKILSARGVVKTHSLNV 174