BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4134.p (1195 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3122_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, ... 1062 0.0 mlr5175_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, ... 812 0.0 CC3176_1 Non COG 761 0.0 RSc3122_2 [C] COG1014 Pyruvate Rso Ralstonia solanacearum 426 e-118 mlr5175_2 [C] COG1014 Pyruvate Mlo Mesorhizobium loti 369 e-101 >RSc3122_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Rso Ralstonia solanacearum Length = 762 Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/727 (68%), Positives = 583/727 (80%), Gaps = 3/727 (0%) Query: 1 MNAPLPAGQRLLLDDVSLDDKFALERGRVFMTGIQALIRLPMLQRQYDERAGLNTAGFIT 60 MNAPL R L+ VSLDDK+ LERGR++++G QAL+RLPMLQ++ D AGLNTAGFI+ Sbjct: 1 MNAPLNDALRRALETVSLDDKYTLERGRIYISGTQALVRLPMLQQERDRIAGLNTAGFIS 60 Query: 61 GYRGSPLGSVDQTAEKARQYLQAKQIKFHPGMNEDLAATSVWGTQQVNLFPGAQYDGVFS 120 GYRGSPLG++DQ KA+++L I F G+NEDLAATSVWG+QQVNL+P A++DGVF Sbjct: 61 GYRGSPLGALDQALWKAQKHLSGHNIVFQAGLNEDLAATSVWGSQQVNLYPSARFDGVFG 120 Query: 121 LWYGKGPGVDRCGDVFKHANMAGTSQHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPV 180 +WYGKGPGVDR DVFKHAN AG+S HGGVLV+AGDDHA KSST AHQSEH+ KA GIPV Sbjct: 121 MWYGKGPGVDRTIDVFKHANSAGSSAHGGVLVLAGDDHACKSSTLAHQSEHVFKAAGIPV 180 Query: 181 LYPSSVQEYLDYGLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERVKIQIPQDFELP 240 LYPS+VQEYLDYGLHGWAMSRY+GLWVAMKCVTD+VES SV +DP R +I +P+DF +P Sbjct: 181 LYPSNVQEYLDYGLHGWAMSRYSGLWVAMKCVTDVVESSASVDVDPHRAEIVLPEDFVMP 240 Query: 241 PDGLNIRLPDTVLGQEARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDT 300 GLNIR PD L QEAR+++YKWYA LAY RANKL+R++ DSP+AR GI+TAGK+YLD Sbjct: 241 AGGLNIRWPDPPLVQEARLLDYKWYAGLAYVRANKLDRVVLDSPQARFGIMTAGKAYLDV 300 Query: 301 RQALEDLGIDEQVAADIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLK 360 RQAL DLG+D++ IGIRLYKVG WPLEA G R FA+GL EILVVEEKRQILEYQLK Sbjct: 301 RQALVDLGLDDETCRRIGIRLYKVGCVWPLEAHGARAFAEGLQEILVVEEKRQILEYQLK 360 Query: 361 EELYNWRDDVRPRVVGKFDDTGEWSGSQREGHGNWLLPASYELNPAQIARAIATRISRYF 420 EELYN+RDDVRPRV GKFD+ G GNWLLPA YEL+PA IARAIATR+ ++ Sbjct: 361 EELYNYRDDVRPRVYGKFDERDNAGGEWSVPMGNWLLPAHYELSPALIARAIATRLEKFE 420 Query: 421 AGHPVEQRVRTRVAYLEAKEAALNISSKPDPNKDRVPHFCSGCPHNTSTKLPEGSRGLAG 480 V R+ R+A ++AKE AL +KP +R P FCSGCPHNTST +PEGSR LAG Sbjct: 421 LPSDVRARIEARIAIIDAKEKAL---AKPRITAERKPWFCSGCPHNTSTNVPEGSRALAG 477 Query: 481 IGCHYMVTWMDRETQLFTHMGGEGVTWVGQAPFTTEKHVFANLGDGTYFHSGLLAVRASV 540 IGCHYM WMDR T F+ MGGEGV W+GQ PF+ +KHVFANLGDGTY+HSGLLA+RAS+ Sbjct: 478 IGCHYMTVWMDRSTNTFSQMGGEGVAWIGQMPFSGDKHVFANLGDGTYYHSGLLAIRASI 537 Query: 541 AAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVSPIIVVTDEPDKYPAGTR 600 AAKVNITYK+LYNDAVAMTGGQ DGPL I+ Q+ AE S I++VTDEP+KY A + Sbjct: 538 AAKVNITYKLLYNDAVAMTGGQPVDGPLSVPQIAAQVHAEGTSRIVIVTDEPEKYNAAIK 597 Query: 601 WAEGVTIRHRSELDAVQRELRERPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVINEA 660 EGVT+ HR LDA+QRELRE PG S +IYDQTCA+EKRRRRKR DPA+RA IN+A Sbjct: 598 LPEGVTVHHRDRLDAIQRELREVPGTSVLIYDQTCATEKRRRRKRGTMADPARRAFINDA 657 Query: 661 VCEACGDCSVQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKP 720 VCE CGDCSV+SNCLSVEPLETE G KR+INQSSCNKD+SCVNGFCPSFVT EG Q++KP Sbjct: 658 VCEGCGDCSVKSNCLSVEPLETELGTKRKINQSSCNKDFSCVNGFCPSFVTAEGAQVRKP 717 Query: 721 ARNKAAT 727 +T Sbjct: 718 ESRGVST 724 >mlr5175_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Mlo Mesorhizobium loti Length = 724 Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/745 (55%), Positives = 523/745 (70%), Gaps = 23/745 (3%) Query: 11 LLLDDVSLDDKFALERGRVFMTGIQALIRLPMLQRQYDERAGLNTAGFITGYRGSPLGSV 70 + L DV+LDDKF L + R+F++G QA+IR+ ++QR+ D RAGLNTAGF++GYRGSPLG + Sbjct: 1 MTLHDVALDDKFDLGKERIFLSGAQAVIRMLLMQRERDRRAGLNTAGFVSGYRGSPLGGL 60 Query: 71 DQTAEKARQYLQAKQIKFHPGMNEDLAATSVWGTQQVNLFPGAQYDGVFSLWYGKGPGVD 130 D KA++ L I F PG+NE+LAAT+ WG+QQ L +DGVFS+WYGKGPGVD Sbjct: 61 DMQLWKAKKQLAGADIVFQPGLNEELAATACWGSQQTELLGEGTHDGVFSVWYGKGPGVD 120 Query: 131 RCGDVFKHANMAGTSQHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPVLYPSSVQEYL 190 R GDVF+HAN+AG+S+HGGVL + GDDH A+SST AH +E + +P+L P+ VQE + Sbjct: 121 RSGDVFRHANLAGSSKHGGVLALMGDDHMAESSTNAHATEFLFVDTMVPILNPAGVQEII 180 Query: 191 DYGLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERVKIQIPQDFELPPDGLNIRLPD 250 DYGL+G+AMSR+ G W A+KCV D +ES SV ER+ I +P+ F++PP GLNIR Sbjct: 181 DYGLYGFAMSRFAGTWAAIKCVKDNIESTASVDASLERLNIVVPE-FDMPPGGLNIRHEI 239 Query: 251 TVLGQEARMINYKWYAALAYARANKLNRIIWDSPR-ARIGIITAGKSYLDTRQALEDLGI 309 +LGQE R+ YK AA A+ AN LNRI++ R ++GIIT GKSYLD RQALED+GI Sbjct: 240 DMLGQEERLHEYKRAAASAFIHANGLNRIVYSGGRNPKLGIITLGKSYLDVRQALEDIGI 299 Query: 310 DEQVAADIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLKEELYNWRDD 369 DE A IGIRL+KVG WPL+ + + EFA+GLD I+VVEEKR ++E QL+E LY Sbjct: 300 DEAAANRIGIRLFKVGCPWPLDLQHIAEFARGLDTIVVVEEKRSLIEVQLRESLYGTAS- 358 Query: 370 VRPRVVGKFDDTGEWSGSQREGHGNWLLPASYELNPAQIARAIATRISRYFAGHPVEQRV 429 +P +VGK D+ G+WL PA L+P +IA A+ RI + P E+ + Sbjct: 359 -QPVIVGKKDE-----------RGDWLFPAKGALDPNEIAIALGERIVKTIG--PSEE-I 403 Query: 430 RTRVAYLEAKEAALNISSKPDPNKDRVPHFCSGCPHNTSTKLPEGSRGLAGIGCHYMVTW 489 RV L +A L ++ R P FCSGCPHN+STK+P+GS AGIGCH+M W Sbjct: 404 SARVGKLRQFQAMLADATDI---GSRTPFFCSGCPHNSSTKVPDGSIAAAGIGCHFMALW 460 Query: 490 MDRETQLFTHMGGEGVTWVGQAPFTTEKHVFANLGDGTYFHSGLLAVRASVAAKVNITYK 549 MDR T FT MGGEG WVGQAPF+ H+F NLGDGTY HSG LA+R +++++ NITYK Sbjct: 461 MDRNTLGFTAMGGEGAQWVGQAPFSKRGHIFQNLGDGTYNHSGTLAIRFALSSEANITYK 520 Query: 550 ILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVSPIIVVTDEPDKYPAGTRWAEGVTIRH 609 ILYNDAVAMTGGQ +G L MI+RQ+ AE V I +VTDEPDKY + G TI H Sbjct: 521 ILYNDAVAMTGGQPHEGGLTVDMIARQVRAEGVDRIAIVTDEPDKYAGKADFPAGATIHH 580 Query: 610 RSELDAVQRELRERPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVINEAVCEACGDCS 669 R +LD VQRELR+ GVS ++YDQTCA+EKRRRRKR +PDP KR INE +CE CGDC Sbjct: 581 RDDLDLVQRELRDVKGVSILLYDQTCAAEKRRRRKRGTFPDPDKRVFINELICEGCGDCG 640 Query: 670 VQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKPARNKAATGP 729 VQSNC+S++P+ETEFGRKR+I+QSSCNKD+SCVNGFCPSFVTV G +++K T P Sbjct: 641 VQSNCVSIQPVETEFGRKRRIDQSSCNKDFSCVNGFCPSFVTVHGAKIRKAEGLAGKTDP 700 Query: 730 ALPALPEPI-LPGLAQPYGILVTGV 753 L +P P P A+ + ++ GV Sbjct: 701 -LDGVPTPAEFPLGAEGWAAIIDGV 724 >CC3176_1 Non COG Length = 715 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/735 (52%), Positives = 494/735 (67%), Gaps = 26/735 (3%) Query: 24 LERGRVFMTGIQALIRLPMLQRQYDERAGLNTAGFITGYRGSPLGSVDQTAEKARQYLQA 83 LE GR F+TG+QAL+R+ + +++ D +AGLNT G+++GYRGSPLG +DQ A + ++ L A Sbjct: 2 LEDGRAFITGVQALLRVLLDRKRLDRKAGLNTGGYLSGYRGSPLGGLDQQAARIKKLLTA 61 Query: 84 KQIKFHPGMNEDLAATSVWGTQQVNLFPGAQYDGVFSLWYGKGPGVDRCGDVFKHANMAG 143 + F G+NEDLAAT+VWG+QQ NLFPGA YDGVF +WYGK PGVDR GDVFKHAN AG Sbjct: 62 HDVVFQEGLNEDLAATAVWGSQQANLFPGALYDGVFGMWYGKAPGVDRTGDVFKHANFAG 121 Query: 144 TSQHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPVLYPSSVQEYLDYGLHGWAMSRYT 203 T GGVL +AGDDH KSST QSE + +PVL P+ VQE LDYGL G +MSR++ Sbjct: 122 TFPTGGVLAVAGDDHGCKSSTLPSQSEFAFQDFEMPVLSPADVQEVLDYGLLGISMSRFS 181 Query: 204 GLWVAMKCVTDLVESGMSVMIDPERVKIQIPQDFELPPDGLNIRLPDTVLGQEARMINYK 263 GLW M + D ++SG+++ + +R +I +P+ F PP GL IR D + +E RM +K Sbjct: 182 GLWTGMIALADTMDSGVTIDVSLDRHQIVVPE-FAFPPGGLGIRQKDQPMEKERRMRLHK 240 Query: 264 WYAALAYARANKLNRIIWDSP-----RARIGIITAGKSYLDTRQALEDLGIDEQVAADIG 318 AALA+ARAN ++R++ + +AR+GI+ G++Y D +A +G+ Q AAD+G Sbjct: 241 IPAALAFARANNIDRVVLGASHVKVGKARLGIVCQGQAYKDVLEAFTAMGMTLQEAADLG 300 Query: 319 IRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLKEELYNWRDDVRPRVVGKF 378 + +YKVGM WPLE G+R FA GL+ ++V+E KR ++E Q + LY+ RPRV+GK Sbjct: 301 VSIYKVGMPWPLEPLGLRAFAAGLETLMVIEHKRALIEPQARAALYDLPAQARPRVIGKT 360 Query: 379 DDTGEWSGSQREGHGNWLLPASYELNPAQIARAIATRISRYFAGHPVEQRVRTRVAYLEA 438 D+ G LL L+ A+IA AI R+ + P +R + AYL Sbjct: 361 DE-----------KGGPLLSELGSLSVAEIALAIYDRLPQ----GPHMERAQ---AYLNR 402 Query: 439 KEAALNISSKPDPNKDRVPHFCSGCPHNTSTKLPEGSRGLAGIGCHYMVTWMDRETQLFT 498 AA + ++ R P FCSGCPHNTSTKLPEGSR LAGIGCHYM + D T L T Sbjct: 403 VSAAGVAAVSLAADQARKPFFCSGCPHNTSTKLPEGSRALAGIGCHYMAGFNDPMTDLNT 462 Query: 499 HMGGEGVTWVGQAPFTTEKHVFANLGDGTYFHSGLLAVRASVAAKVNITYKILYNDAVAM 558 HMGGEG+TWVG APFT+EKHVF NLGDGTY HSG LA+R +VAA NITYK+LYNDAVAM Sbjct: 463 HMGGEGLTWVGAAPFTSEKHVFQNLGDGTYNHSGSLAIRGAVAAGTNITYKLLYNDAVAM 522 Query: 559 TGGQEFDGPLDPAMISRQLAAENVSPIIVVTDEPDKYPAGTRWAEGVTIRHRSELDAVQR 618 TGGQ + PA I+RQLAAE V ++V DE ++Y A GV I RS+L VQ Sbjct: 523 TGGQRAESGFTPAQITRQLAAEGVKKTVIVVDELERYQGVNDLAPGVEIFPRSDLMRVQE 582 Query: 619 ELRERPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVINEAVCEACGDCSVQSNCLSVE 678 LRE PG + ++YDQTCA+EKRRRRKR + P +R IN VCE CGDCSV+SNC+SVE Sbjct: 583 MLRETPGTTVLLYDQTCATEKRRRRKRGSMPKATQRVFINPLVCEGCGDCSVKSNCVSVE 642 Query: 679 PLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKPARNKAATGPALPALPEPI 738 PL TEFGRKR+INQSSCN+DYSCV GFCPSF+T+EG + + + AA LPE Sbjct: 643 PLATEFGRKRKINQSSCNQDYSCVEGFCPSFITLEGAESAQSKKTPAALTAESTPLPE-- 700 Query: 739 LPGLAQPYGILVTGV 753 L IL TGV Sbjct: 701 FEPLTGVRKILFTGV 715 >RSc3122_2 [C] COG1014 Pyruvate Rso Ralstonia solanacearum Length = 425 Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust. Identities = 226/417 (54%), Positives = 294/417 (70%), Gaps = 8/417 (1%) Query: 767 MAAHVEGRACSVLDMSGLAQKGGPVMSHVRVAEAPDHIYSTRVGTGMADLVIGCDVIVTA 826 MAAH+EG+ +VLDM+GLAQKGG V+SHV++ E PD I++TR+ G ADLVIGCD IV+A Sbjct: 1 MAAHIEGKGVTVLDMAGLAQKGGAVLSHVQIGERPDTIHATRIAMGEADLVIGCDAIVSA 60 Query: 827 NRDALSRMGEGRTHAAVNSTQLPTAAFVRNPDWQFPTAFSEGEIAKACGRDNLALIDAGR 886 + + LS++ G+T A VNS PTA F++NP+W+FP + +E +I A G D A DA Sbjct: 61 SDEVLSKVQFGQTRAIVNSAATPTADFIKNPNWRFPGSSAEADIRAAVG-DACAFEDASA 119 Query: 887 IATALMGDAIATNMFMLGYAWQKAWVPLSEAALLRAIELNALQVEFNRQAFAWGRVAAHD 946 +A L+GDAI TN +LG+AWQK W+PL+ ALLRAIELN + V+ N+ AF WGR AHD Sbjct: 120 LAVRLLGDAIYTNPLVLGFAWQKGWIPLTYDALLRAIELNGVSVDKNKTAFEWGRHLAHD 179 Query: 947 LDFVLAAAGRNG-MTAQVIAFKRTPTLEELVQRRESFLSGYQNAAYGRSYRDFVEQVRAR 1005 + VLA AG A+VIA TL+ L+ RR L+ YQNAAY ++R VE+VR Sbjct: 180 REAVLALAGAAPRAKAEVIALP--ATLDTLIARRVDLLTAYQNAAYADAFRVVVERVRTA 237 Query: 1006 EAALGEAGRGLKLSRAVATYLFKLMAYKDEYEVARLHTDPAFRAKIAGMFEG----DYKL 1061 EAA+ AG+ L L+ AVA L +LMAYKDEYEVARL+TDPAF K+ F+G DY+L Sbjct: 238 EAAVAGAGQPLTLTEAVARNLSRLMAYKDEYEVARLYTDPAFLDKLRAQFDGEPGRDYQL 297 Query: 1062 RFHLAPPLLARRDEQGHLRKQSFGSWMMPVFGVLARLRFLRGTAFDPFGYTQERRQERAL 1121 F LAPPL A+RDE+GHL KQ FG M +F +LA+LR LRGTA D FG T+ERR ERAL Sbjct: 298 NFWLAPPLWAKRDEKGHLVKQRFGPNTMRIFKLLAKLRGLRGTALDVFGKTEERRTERAL 357 Query: 1122 ITDYRHTLTQLLAQLTPENLEQVIAVARIPEEIRGYGHVKERHLKAAQHKQAALLAQ 1178 I +YR + +L++ L+ + L I +AR+PE+IRG+GHVKE +L AA+ + LLAQ Sbjct: 358 IGEYRALVDELVSGLSTQKLALAIDLARLPEDIRGFGHVKEANLAAARVRWGKLLAQ 414 >mlr5175_2 [C] COG1014 Pyruvate Mlo Mesorhizobium loti Length = 435 Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust. Identities = 200/438 (45%), Positives = 267/438 (60%), Gaps = 14/438 (3%) Query: 754 GGTGVITIGQIIAMAAHVEGRACSVLDMSGLAQKGGPVMSHVRVAEAPDHIYSTRVGTGM 813 GGTGV+T+G ++ MAAH+E + C ++DM+GLAQKGG V +HVR+A PD I++ RV G Sbjct: 1 GGTGVVTVGAVLGMAAHLEDKGCGMIDMAGLAQKGGSVFTHVRIARTPDDIHAIRVSAGK 60 Query: 814 ADLVIGCDVIVTANRDALSRMGEGRTHAAVNSTQLPTAAFVRNPDWQFPTAFSEGEIAKA 873 ADLV+GCD++V+ + L+ + EG T N+ ++ F R+ D+ P + I A Sbjct: 61 ADLVLGCDLVVSGAKKVLTAVREGHTIFLANTAEIMPGEFARSADFSLPIERLKKAIRAA 120 Query: 874 CGRDNLALIDAGRIATALMGDAIATNMFMLGYAWQKAWVPLSEAALLRAIELNALQVEFN 933 G D DA R ATAL G+++ NMFMLG+A+Q +PLS A+ RAIELN V N Sbjct: 121 AGDDKAHFFDATRTATALFGNSLGANMFMLGFAFQHGGLPLSAEAVERAIELNGEAVAMN 180 Query: 934 RQAFAWGRVAAHDLDFV---LAAAGRNGMTAQVIAFKRTPTLEELVQRRESFLSGYQNAA 990 AF WGR AAH DFV +A GR G TA V TL+E++ RR +FL+ YQNAA Sbjct: 181 IAAFRWGRRAAHQPDFVRGLVAQPGRAGETAPV-----AQTLDEIIARRVAFLTAYQNAA 235 Query: 991 YGRSYRDFVEQVRARE--AALGEAGRGLKLSRAVATYLFKLMAYKDEYEVARLHTDPAFR 1048 YG+ Y D + +RA E A G ++ A A LFKLMA KDEYEVARL+TD +F Sbjct: 236 YGKRYADRLTLLRAAETRAVPGSTA----VTEAAARNLFKLMAIKDEYEVARLYTDGSFA 291 Query: 1049 AKIAGMFEGDYKLRFHLAPPLLARRDEQGHLRKQSFGSWMMPVFGVLARLRFLRGTAFDP 1108 A++ F+ KL FHLAPP++ RR G RK SFG WMM F +LA L+ LRGTAFD Sbjct: 292 AELGKQFQSYEKLEFHLAPPIMGRRGNDGTPRKSSFGPWMMKGFRLLAALKGLRGTAFDL 351 Query: 1109 FGYTQERRQERALITDYRHTLTQLLAQLTPENLEQVIAVARIPEEIRGYGHVKERHLKAA 1168 FGYT ERR ER L+ Y L + L P + +A+ +P IRGYGHV++ + A Sbjct: 352 FGYTAERRMERQLLAQYEGDLELVANSLAPGKADAAVALVSVPALIRGYGHVRQASAEKA 411 Query: 1169 QHKQAALLAQLQKESSHS 1186 ++ LL +L + + Sbjct: 412 AGERQRLLERLSSTPTQT 429