BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4124.p (306 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2175 [R] COG1079 Uncharacterized ABC-type transport system, p... 465 e-131 BMEII0701 [R] COG1079 Uncharacterized ABC-type transport system,... 300 2e-81 AGc3294 [R] COG1079 Uncharacterized ABC-type transport system, p... 283 5e-76 PA0138 [R] COG1079 Uncharacterized ABC-type transport system, pe... 277 2e-74 SMa1514 [R] COG1079 Uncharacterized ABC-type transport system, p... 276 3e-74 >RSc2175 [R] COG1079 Uncharacterized ABC-type transport system, permease component Rso Ralstonia solanacearum Length = 306 Score = 465 bits (1196), Expect = e-131, Method: Compositional matrix adjust. Identities = 244/306 (79%), Positives = 271/306 (88%) Query: 1 MEQLAPLIAASINAGTPLLLAAIGLLINERSGVLNLGAEGMMLVSAIAGFAVGYTTKSPL 60 ME LAPLIAASINAGTPLLLAA+GLL+NER+GVLNLGAEGMMLV+A+AGF VGY T+ PL Sbjct: 1 MESLAPLIAASINAGTPLLLAALGLLMNERAGVLNLGAEGMMLVAAVAGFMVGYQTQIPL 60 Query: 61 LGFLAGAVCGMLMASLFAWLALQLATNQVATGLALSIFGAGLSAFVGQRFVGLALPAQPN 120 LGF AGA+ GM+MA+LFAWLAL L TNQVATGLALSIFG GLSAF+GQRFVG++LPAQ Sbjct: 61 LGFAAGALAGMVMAALFAWLALVLVTNQVATGLALSIFGTGLSAFMGQRFVGMSLPAQAY 120 Query: 121 SIPLLGDIPFLGTALFHQHWMSYLAFALCLASIWFLYRTRAGLVLRAVGESPESAHALGY 180 IP L +PF+G ALF QHWM Y A LC A WFL+RTRAGL LRA+GESPESAHALGY Sbjct: 121 GIPGLKSLPFVGPALFGQHWMVYCALLLCGAIAWFLFRTRAGLTLRAIGESPESAHALGY 180 Query: 181 SVRGIRYLALLFGGACCGLAGAYMSLVYTPMWVEGLVAGRGWIALALTAFATWRPARVLL 240 VR IR+ ALLFGGACCGLAGAY+SL+YTPMWVE +VAGRGWIALALT FATWRP R+L Sbjct: 181 PVRTIRFGALLFGGACCGLAGAYLSLIYTPMWVENMVAGRGWIALALTTFATWRPLRILF 240 Query: 241 GSLLFGGVTIAQFYLQGMGVTVPSQILSMAPYLATIVVLALISRNPDWIRLNMPASLGKP 300 G+LLFGGVTI QFYLQG+GV+VPSQILSMAP+ ATIVVLA+ISRNPDWIRLNMPASLGKP Sbjct: 241 GALLFGGVTILQFYLQGIGVSVPSQILSMAPFAATIVVLAVISRNPDWIRLNMPASLGKP 300 Query: 301 FRPGAS 306 FRPG + Sbjct: 301 FRPGTA 306 >BMEII0701 [R] COG1079 Uncharacterized ABC-type transport system, permease component Bme Brucella melitensis Length = 304 Score = 300 bits (769), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 174/292 (59%), Positives = 209/292 (71%), Gaps = 1/292 (0%) Query: 13 NAGTPLLLAAIGLLINERSGVLNLGAEGMMLVSAIAGFAVGYTTKSPLLGFLAGAVCGML 72 A TPLL+AAIG L+ ERSGVLNLG EGMML+ A++GFAV T S LG +A + G L Sbjct: 11 TAATPLLIAAIGELVVERSGVLNLGVEGMMLMGAVSGFAVAQITGSAWLGLVAAVLVGAL 70 Query: 73 MASLFAWLALQLATNQVATGLALSIFGAGLSAFVGQRFVGL-ALPAQPNSIPLLGDIPFL 131 A++F +L L L TNQVATGLAL+I G G+SA +G+ FVGL + P IP L D+P + Sbjct: 71 FAAVFGFLTLTLVTNQVATGLALTILGVGVSALLGESFVGLPGVRLNPIYIPYLTDLPLI 130 Query: 132 GTALFHQHWMSYLAFALCLASIWFLYRTRAGLVLRAVGESPESAHALGYSVRGIRYLALL 191 G LF Q + Y++ AL + WFL+RTRAGL LRA+G+S SAHALG V RYLA+L Sbjct: 131 GRFLFGQDPIFYMSIALVIGVAWFLFRTRAGLTLRAIGDSHGSAHALGVHVVRTRYLAVL 190 Query: 192 FGGACCGLAGAYMSLVYTPMWVEGLVAGRGWIALALTAFATWRPARVLLGSLLFGGVTIA 251 FGGAC GLAGA +SLVY P WVE + AGRGWIALAL FA+WRP RVL+G+ LFG VTI Sbjct: 191 FGGACAGLAGAQLSLVYVPQWVENMTAGRGWIALALVVFASWRPWRVLVGAYLFGAVTIG 250 Query: 252 QFYLQGMGVTVPSQILSMAPYLATIVVLALISRNPDWIRLNMPASLGKPFRP 303 Q + Q +G +PSQ LS PYLATIVVL +ISRN +N PASLGKPF P Sbjct: 251 QLHAQALGFGLPSQFLSALPYLATIVVLVIISRNKRLTMMNTPASLGKPFVP 302 >AGc3294 [R] COG1079 Uncharacterized ABC-type transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 307 Score = 283 bits (723), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 168/304 (55%), Positives = 211/304 (69%), Gaps = 1/304 (0%) Query: 1 MEQLAPLIAASINAGTPLLLAAIGLLINERSGVLNLGAEGMMLVSAIAGFAVGYTTKSPL 60 M+ L ++ I A TPL++AA G L+ ERSGVLNLG EGMM++ A+ FA + T SP Sbjct: 2 MDMLQAILLTVITAATPLVIAASGELVAERSGVLNLGVEGMMIMGAVCAFAATHMTGSPY 61 Query: 61 LGFLAGAVCGMLMASLFAWLALQLATNQVATGLALSIFGAGLSAFVGQRFVGL-ALPAQP 119 LG LAG G + + LF +L L L TNQVATGLAL+I G G+S +G+ FVGL + QP Sbjct: 62 LGILAGIASGAVFSLLFGFLTLTLVTNQVATGLALTILGLGVSGMLGESFVGLPGIKLQP 121 Query: 120 NSIPLLGDIPFLGTALFHQHWMSYLAFALCLASIWFLYRTRAGLVLRAVGESPESAHALG 179 P+L +IPF+G LF Q + Y++ AL WFL+++RAGL +RA+G++ SAHALG Sbjct: 122 IVFPVLSEIPFIGPLLFRQDLIFYMSIALVFGISWFLFKSRAGLKIRAIGDNHASAHALG 181 Query: 180 YSVRGIRYLALLFGGACCGLAGAYMSLVYTPMWVEGLVAGRGWIALALTAFATWRPARVL 239 +V RYLA++FGGAC GLAGA +SLVYTP WVE + AGRGWIALAL FA+WRP R+L Sbjct: 182 INVIRTRYLAVMFGGACAGLAGAQLSLVYTPQWVENMSAGRGWIALALVVFASWRPWRLL 241 Query: 240 LGSLLFGGVTIAQFYLQGMGVTVPSQILSMAPYLATIVVLALISRNPDWIRLNMPASLGK 299 G LFG VTI Q + Q G+ VPSQ+LS PYLATIVVL +IS N +N PASLGK Sbjct: 242 AGGYLFGAVTIGQLHAQAFGIGVPSQLLSALPYLATIVVLVIISHNRRTTLINTPASLGK 301 Query: 300 PFRP 303 F P Sbjct: 302 SFVP 305 >PA0138 [R] COG1079 Uncharacterized ABC-type transport system, permease component Pae Pseudomonas aeruginosa Length = 308 Score = 277 bits (708), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 165/305 (54%), Positives = 216/305 (70%), Gaps = 1/305 (0%) Query: 1 MEQLAPLIAASINAGTPLLLAAIGLLINERSGVLNLGAEGMMLVSAIAGFAVGYTTKSPL 60 ++ L L+ A + GTPLLL A+G L+ ERSGVLNLG EGMML A+ GF V +++ S Sbjct: 3 IDLLDNLLFAMVRTGTPLLLVALGELVCERSGVLNLGQEGMMLFGAVIGFMVAFSSGSLW 62 Query: 61 LGFLAGAVCGMLMASLFAWLALQLATNQVATGLALSIFGAGLSAFVGQRFVGLALPA-QP 119 LG L + GML+A+LFA +AL L NQVA GLAL+IFG GL++FVG +VG L P Sbjct: 63 LGVLLAVLAGMLLAALFAGVALYLNANQVACGLALTIFGVGLASFVGAAWVGKPLQGFAP 122 Query: 120 NSIPLLGDIPFLGTALFHQHWMSYLAFALCLASIWFLYRTRAGLVLRAVGESPESAHALG 179 ++P+LG++P LG LF Q + YL+ AL A W L R+RAGLVL+AVGE+P++A A+G Sbjct: 123 LALPVLGELPLLGRMLFAQDALVYLSLALFAAVAWMLLRSRAGLVLQAVGENPDAASAMG 182 Query: 180 YSVRGIRYLALLFGGACCGLAGAYMSLVYTPMWVEGLVAGRGWIALALTAFATWRPARVL 239 V +R LA+LFGGA GLAGAY+SL YTPMW E + AGRGWIALAL FA+WR RVL Sbjct: 183 LPVLRVRTLAVLFGGAMAGLAGAYLSLAYTPMWAENMTAGRGWIALALVVFASWRVLRVL 242 Query: 240 LGSLLFGGVTIAQFYLQGMGVTVPSQILSMAPYLATIVVLALISRNPDWIRLNMPASLGK 299 LG+ LFG +I QG+G+++P+ +L+M PY ATI+VL L+SR+ RL P SLG+ Sbjct: 243 LGAWLFGLASILHLVAQGVGLSIPANLLAMLPYAATILVLVLLSRDALRTRLYAPVSLGQ 302 Query: 300 PFRPG 304 P++ G Sbjct: 303 PWKAG 307 >SMa1514 [R] COG1079 Uncharacterized ABC-type transport system, permease component Sme Sinorhizobium meliloti Length = 306 Score = 276 bits (707), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 157/304 (51%), Positives = 203/304 (66%), Gaps = 3/304 (0%) Query: 1 MEQLAPLIAASINAGTPLLLAAIGLLINERSGVLNLGAEGMMLV-SAIAGFAVGYTTKSP 59 M+ + +I A TPL+ AA+G L+ E+SGVLNLG EGMML+ +A A +AV P Sbjct: 1 MDLFIAIFTGTIIAATPLIFAALGELVVEKSGVLNLGLEGMMLMGAAFAFWAVIAGLPMP 60 Query: 60 LLGFLAGAVCGMLMASLFAWLALQLATNQVATGLALSIFGAGLSAFVGQRFVGLALPA-Q 118 + + LF LAL TNQ A GLAL+IFG+G+SAF+G+ F + A + Sbjct: 61 VAIAAGALAG-AATSLLFGVLALTFLTNQYAAGLALAIFGSGVSAFLGRGFGSAPIDALK 119 Query: 119 PNSIPLLGDIPFLGTALFHQHWMSYLAFALCLASIWFLYRTRAGLVLRAVGESPESAHAL 178 IP L DIP +G F M YLA + WFLYRT+ GL+LR +GESPE++HA+ Sbjct: 120 RVHIPFLSDIPVVGPMFFRFDPMVYLAIGMFGLITWFLYRTKGGLILRTIGESPETSHAI 179 Query: 179 GYSVRGIRYLALLFGGACCGLAGAYMSLVYTPMWVEGLVAGRGWIALALTAFATWRPARV 238 GY V IRYLA+LFGG GLAGAY+S+ YTP+WVE + AG+GWI+LAL FATWRP RV Sbjct: 180 GYPVIRIRYLAVLFGGLMAGLAGAYLSVAYTPLWVENMTAGKGWISLALVVFATWRPLRV 239 Query: 239 LLGSLLFGGVTIAQFYLQGMGVTVPSQILSMAPYLATIVVLALISRNPDWIRLNMPASLG 298 L+G+ LFGG+TI Q Q +G+ VPS++LS PYLATI+VL +IS+N + L+ PASL Sbjct: 240 LIGAWLFGGMTILQLQGQALGIAVPSELLSALPYLATIIVLVIISQNRQLLTLHFPASLA 299 Query: 299 KPFR 302 KPFR Sbjct: 300 KPFR 303