BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4113.p (246 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2117 [K] COG1802 Transcriptional regulators Rso Ralstonia sol... 315 7e-86 PA1520 [K] COG1802 Transcriptional regulators Pae Pseudomonas ae... 176 6e-44 RSc3276 [K] COG1802 Transcriptional regulators Rso Ralstonia sol... 130 3e-30 AGpA592 [K] COG1802 Transcriptional regulators Atu Agrobacterium... 129 4e-30 AGl357 [K] COG1802 Transcriptional regulators Atu Agrobacterium ... 124 2e-28 >RSc2117 [K] COG1802 Transcriptional regulators Rso Ralstonia solanacearum Length = 250 Score = 315 bits (806), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 158/246 (64%), Positives = 185/246 (75%), Gaps = 1/246 (0%) Query: 1 MNKANKTARSPAAPARASTRERESTGAVEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIY 60 M+K+ K + AA + + VEERMY +IYDAIMEHRLPPRTKLTE LC+IY Sbjct: 1 MSKSLKLVSTDAASKSGAKASGTTRMPVEERMYHEIYDAIMEHRLPPRTKLTEHALCEIY 60 Query: 61 DTARHTVRKVLSRLASEGMVDLEANRGAFIASPSHAEVRDMFELRNILEHAVLEKVGRQA 120 TARHTVRKV SRLA++G+VDLE NRGAFIA+PS E MFELR ILE AVL+KVGR A Sbjct: 61 ATARHTVRKVFSRLAADGLVDLEPNRGAFIAAPSIDEAHAMFELRQILERAVLDKVGRSA 120 Query: 121 GTRQ-IAGLRRMVEEERDCYLNGDRPRWIRLSAQFHLALAELTGNALLVETLRKLVSRTT 179 + +A L V EER +++ DRPRWIRLSA+FH+ALAE GN L+VE +R+LVSRTT Sbjct: 121 SPKAAVAPLLARVNEERQAFVSHDRPRWIRLSAEFHVALAEQAGNPLVVEIMRRLVSRTT 180 Query: 180 LMIAKTEAPGHNACSFDEHETVLEALEKGDIEAAQEHMAHHLHLCEDRVRPDADDQFDLR 239 LMIA EAPGHNACSFDEH +L ALE+GD+ AAQ HMA HL C DRVRP+A FDLR Sbjct: 181 LMIASVEAPGHNACSFDEHLDILRALERGDVGAAQAHMAQHLQCCADRVRPEAPADFDLR 240 Query: 240 AVLGKG 245 AVLG+G Sbjct: 241 AVLGRG 246 >PA1520 [K] COG1802 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 259 Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 97/219 (44%), Positives = 137/219 (62%), Gaps = 1/219 (0%) Query: 25 TGAVEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLSRLASEGMVDLEA 84 +G +E +Y I+DAI+E RL P TKL+E+ L +I+ +R +R+ LSRLA E +V L Sbjct: 20 SGTQDEIVYAHIFDAILEQRLAPGTKLSEEALGEIFGVSRTIIRRALSRLAHEQVVLLRP 79 Query: 85 NRGAFIASPSHAEVRDMFELRNILEHAVLEKVGRQAGTRQIAGLRRMVEEERDCYLNGDR 144 NRGA +ASPS E R + R +E A+ E A ++A LR MV +E+ + GDR Sbjct: 80 NRGAVVASPSIDEARQILFARRTVERAITELATDNATAERLAELREMVVQEQSSFARGDR 139 Query: 145 PRWIRLSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSFDEHETVLEA 204 IRLS +FHL LAE+ NA LV R LVS+T+L+IA+ E+ G + CSFDEH +L+A Sbjct: 140 GAGIRLSGEFHLKLAEMARNAPLVSFQRSLVSQTSLIIAQYESGGRSHCSFDEHNEILDA 199 Query: 205 LEKGDIEAAQEHMAHHLHLCEDRVRPDADD-QFDLRAVL 242 +EKGD E A M HH+ + ++ ++D+ DL AV Sbjct: 200 IEKGDKERAVTLMMHHMEHIDSKLNLESDNASGDLHAVF 238 >RSc3276 [K] COG1802 Transcriptional regulators Rso Ralstonia solanacearum Length = 229 Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 120/205 (58%), Gaps = 4/205 (1%) Query: 19 TRERESTGAVEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLSRLASEG 78 T E ++ E + +DI AI+ HRLPP TKL E+ L ++Y +R +R L LA + Sbjct: 2 TEETQAADLSSEGIAEDIAQAIVAHRLPPGTKLREEALARVYHVSRTKIRAALLMLAKDK 61 Query: 79 MVDLEANRGAFIASPSHAEVRDMFELRNILEHAVLEKVGRQAGTRQIAGLRRMVEEERDC 138 ++ +E +RGAF+A P E R++F +R +LE A+ + +A A L + + EE + Sbjct: 62 LIRIEPDRGAFVARPDETEAREVFAVRRVLEVALAREFIARATPADYARLEQHLAEEHEV 121 Query: 139 YLNGDRPRWIRLSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSFDEH 198 + D PR RL A FHL +A++ GN++L E LR+L +R++++ ++ S +EH Sbjct: 122 AASTDVPRRNRLMADFHLLMADVVGNSVLKEMLRELSARSSVITMMYQSTYDAVRSSEEH 181 Query: 199 ETVLEALEKGDIEAA----QEHMAH 219 L+A ++GD+E A +EHMAH Sbjct: 182 TAFLDAAKRGDVEGAIALMEEHMAH 206 >AGpA592 [K] COG1802 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 249 Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/217 (36%), Positives = 119/217 (54%), Gaps = 2/217 (0%) Query: 28 VEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLSRLASEGMVDLEANRG 87 V ER+ + +AI E L P TK+ E + + +R VR L L S+ +++ + NRG Sbjct: 29 VSERIRTTLANAIGEGALKPGTKILEDAIADHFGVSRTVVRGALGVLESDHLLERKRNRG 88 Query: 88 AFIASPSHAEVRDMFELRNILEHAVLEKVGRQAGTRQIAGLRRMVEEERDCYLNGDRPRW 147 F+A P E R +FE R +EHA+L+ V +A T Q+ L ++ +EE + +GD Sbjct: 89 TFVAEPGIEEARALFEARRKIEHAILDLVMARATTEQLDALEKLTDEEEHIHHHGDEKSK 148 Query: 148 IRLSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSFDEHETVLEALEK 207 LS +FH+ LAEL N ++ ETL K+V+R +L++A + C D H ++ AL+ Sbjct: 149 TVLSGKFHIVLAELGVNVVMTETLSKIVARLSLVMALYGEDKKDDCGADHHRMIVAALKA 208 Query: 208 GDIEAAQEHMAHHLHLCEDRVRPDA--DDQFDLRAVL 242 D+ AQ+ M HHL E RVR A D+ AVL Sbjct: 209 KDLAKAQQLMDHHLADIEGRVRLTAGQGDRHTFMAVL 245 >AGl357 [K] COG1802 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 225 Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 115/223 (51%), Gaps = 2/223 (0%) Query: 23 ESTGAVEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLSRLASEGMVDL 82 E G +++ + ++ +I E RL P +L E+ L I+ +R +R+ LS L +G+V + Sbjct: 3 EQAGPSTQQIVEKVWLSIAERRLRPGVQLKEEQLATIFGVSRARIRQALSVLERDGLVTI 62 Query: 83 EANRGAFIASPSHAEVRDMFELRNILEHAVLEKVGRQAGTRQIAGLRRMVEEERDCYLNG 142 NRGAF++ PS E RD+F +R +E V+E++ R A + LR V +ER Sbjct: 63 VPNRGAFVSKPSVEEARDVFFVRRTVEQCVVERLCRSATKTDLKKLRDHVAKERVANTRN 122 Query: 143 DRPRWIRLSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSFDEHETVL 202 I+LS FHL LAE G+ L T+R L+SR++L+ A C DEH ++ Sbjct: 123 VTTDIIKLSGGFHLLLAETLGSDFLFTTMRDLISRSSLITAVYRNTDRFNCGPDEHAEIV 182 Query: 203 EALEKGDIEAAQEHMAHHLHLCEDRVRPDA--DDQFDLRAVLG 243 +A+ D A M HHL E + D DLRA LG Sbjct: 183 DAIANNDPSRAIHLMTHHLEHVEAELDLSEIRDLSHDLRAALG 225