BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4111.p         (181 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO1537 [P] COG4773 Outer membrane receptor for ferric coprogen ...    30   2.3  

>YPO1537 [P] COG4773 Outer membrane receptor for ferric coprogen and
           ferric-rhodotorulic acid Ype Yersinia pestis
          Length = 753

 Score = 30.4 bits (67), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 18/90 (20%)

Query: 40  YKTILSGSYQGFLR------NWDEQRQPV-------FCALIRSRAEWDH-----WMLPAP 81
           Y   ++G Y  F R       W+ QRQ +        C   R+  +        W  P P
Sbjct: 390 YDIQVNGQYSLFGRQHQLGLGWNRQRQNIDNDYYLATCNATRTCPDLGDFTQPGWQYPKP 449

Query: 82  VMNDKRPFGPSPDHFERKQYLVVARTMSAP 111
           V +DKR +G      +  QY+V   ++  P
Sbjct: 450 VWSDKRAYGSKGRSDQSSQYVVTQLSLIDP 479