BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4104.p (260 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc2566 [ET] COG0834 ABC-type amino acid transport/signal transd... 353 1e-97 RSc2103 [ET] COG0834 ABC-type amino acid transport/signal transd... 308 5e-84 YPO3257 [ET] COG0834 ABC-type amino acid transport/signal transd... 306 4e-83 mlr4897 [ET] COG0834 ABC-type amino acid transport/signal transd... 208 1e-53 SMa0082 [ET] COG0834 ABC-type amino acid transport/signal transd... 204 1e-52 >AGc2566 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 261 Score = 353 bits (907), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 175/257 (68%), Positives = 207/257 (80%), Gaps = 1/257 (0%) Query: 5 KLLLGLLAGAMMFSAS-VAHADALDDIQKHGTLRVAVPADFPPFGSVDSDLKPQGLDIDV 63 +LLL + A ++ S A ADAL DI GT+RVAVP DFPPFGSV +D+ PQG DIDV Sbjct: 5 RLLLAIAAVSVTLGFSPAAFADALGDISSRGTIRVAVPQDFPPFGSVGTDMAPQGYDIDV 64 Query: 64 AGLIAKKLGVKVELIPVSSANRIPYLTTRKVDLVISSMGKNAEREKVIDFTAAYAPFFNG 123 A LI +KLGVKVEL+PV+SANR+PYL T KVDLVISS+GKN +REKVIDF+ AYAPFFNG Sbjct: 65 ANLIGEKLGVKVELVPVTSANRVPYLQTNKVDLVISSLGKNPDREKVIDFSTAYAPFFNG 124 Query: 124 VFGPADLPVKSAADLAGKTIAVTRGSVEDLELSKIVPASATVKRYEDNNSTISSFLSGQV 183 VF P + V A DL+GKTI VTRG+VEDLEL+K+ PA T+KRYEDNN TIS+FL+GQV Sbjct: 125 VFAPDSVTVAKAEDLSGKTIGVTRGAVEDLELTKVAPADTTIKRYEDNNGTISAFLAGQV 184 Query: 184 QLVATGNVVAAAIIAKNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAEAKKDGS 243 + VATGNVVAAAI+AKNPPK+PE KFLIK+SPC+IGLNK + L +KV+AI+A AK DGS Sbjct: 185 EAVATGNVVAAAILAKNPPKRPELKFLIKNSPCYIGLNKEQPALLEKVNAIIATAKTDGS 244 Query: 244 LNAISQKWLGLPLPAGL 260 LN I+QKWL LP L Sbjct: 245 LNTIAQKWLKTDLPKDL 261 >RSc2103 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 267 Score = 308 bits (790), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 147/239 (61%), Positives = 189/239 (79%) Query: 22 AHADALDDIQKHGTLRVAVPADFPPFGSVDSDLKPQGLDIDVAGLIAKKLGVKVELIPVS 81 AHADAL +IQK G +RVA+P DFPPFGS+ +DLK QG DID+A L+AK+LGVK EL+PV+ Sbjct: 29 AHADALANIQKAGVIRVAIPNDFPPFGSLGTDLKLQGYDIDMANLVAKELGVKAELVPVT 88 Query: 82 SANRIPYLTTRKVDLVISSMGKNAEREKVIDFTAAYAPFFNGVFGPADLPVKSAADLAGK 141 S NRIP+LTT KVD+VISS+GKNAER KVIDFT AYAPF V+GP D+ +K+ ADLAGK Sbjct: 89 STNRIPFLTTGKVDVVISSLGKNAERAKVIDFTQAYAPFPKSVYGPKDVSIKTPADLAGK 148 Query: 142 TIAVTRGSVEDLELSKIVPASATVKRYEDNNSTISSFLSGQVQLVATGNVVAAAIIAKNP 201 TI VTRGS EDL L+ + PASAT+KRYEDNN+T S+L GQVQLV GN+VA A+ + Sbjct: 149 TIGVTRGSTEDLALTAVAPASATIKRYEDNNATAQSYLIGQVQLVTLGNIVANAVNERTR 208 Query: 202 PKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAEAKKDGSLNAISQKWLGLPLPAGL 260 ++ + KF ++D+PC++G+ KGE L +KV+A + + K DG LN +SQ+W+ +PLPA L Sbjct: 209 LRQLDVKFPVEDTPCYVGVAKGEPALLEKVNAAITKLKSDGRLNDLSQRWIKMPLPAKL 267 >YPO3257 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Ype Yersinia pestis Length = 262 Score = 306 bits (783), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 147/260 (56%), Positives = 195/260 (75%) Query: 1 MKLTKLLLGLLAGAMMFSASVAHADALDDIQKHGTLRVAVPADFPPFGSVDSDLKPQGLD 60 M + K +L L A ++ A AD L+ IQ+ G LRVAVP DFPPFGSV +DL+PQG D Sbjct: 1 MNIKKRMLWLWAVLVLVQAPAVLADQLEKIQQRGVLRVAVPQDFPPFGSVGTDLQPQGYD 60 Query: 61 IDVAGLIAKKLGVKVELIPVSSANRIPYLTTRKVDLVISSMGKNAEREKVIDFTAAYAPF 120 ID+A +A K+ +K++L+ V+SANR+PYL T KVDLVISS+GKN EREK I F+ AYAPF Sbjct: 61 IDMAQYLADKMKLKLQLVSVTSANRVPYLQTDKVDLVISSLGKNPEREKAIAFSRAYAPF 120 Query: 121 FNGVFGPADLPVKSAADLAGKTIAVTRGSVEDLELSKIVPASATVKRYEDNNSTISSFLS 180 F GVFG D +K LAGKTI VTRG+VED+ LS+I P +A ++RYEDNN+T+S++LS Sbjct: 121 FLGVFGAKDDELKQPEQLAGKTIGVTRGAVEDMVLSEIAPKAAQIRRYEDNNTTLSAYLS 180 Query: 181 GQVQLVATGNVVAAAIIAKNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAEAKK 240 GQV +ATGN+V +A+ +NP + P KF++KDSPC+IGL +GE L+ KVDA++ +A + Sbjct: 181 GQVNYLATGNLVISALARQNPKQAPVAKFMLKDSPCYIGLRQGEPALKAKVDALIGDALQ 240 Query: 241 DGSLNAISQKWLGLPLPAGL 260 D +LN +S+KWL PLPA L Sbjct: 241 DNTLNGLSEKWLKAPLPADL 260 >mlr4897 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Mlo Mesorhizobium loti Length = 269 Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 119/250 (47%), Positives = 162/250 (64%), Gaps = 1/250 (0%) Query: 7 LLGLLAGAMMFSASVAHADALDDIQKHGTLRVAVPADFPPFGSVDSDLKPQGLDIDVAGL 66 +L L A + + A+ADAL DI K GT+ V V ADFPPF S +D+ +G D+DVA Sbjct: 14 ILVLGAAGLGIATQAANADALADITKAGTINVGVFADFPPFSSASADMSLKGYDMDVAQY 73 Query: 67 IAKKLGVKVELIPVSSANRIPYLTTRKVDLVISSMGKNAEREKVIDFTAAYAPFFNGVFG 126 IA L VK+ + V+ NRIPYL +VD+++S +G + ERE+VIDF AAYAP++ V G Sbjct: 74 IADTLKVKLNPVAVTGQNRIPYLNDHRVDILMS-VGYSKEREQVIDFAAAYAPYYIAVIG 132 Query: 127 PADLPVKSAADLAGKTIAVTRGSVEDLELSKIVPASATVKRYEDNNSTISSFLSGQVQLV 186 PA + VK DLA K+IAV RG++ED L++ PASA +KR+++ NS I +F+SGQ QL+ Sbjct: 133 PAAMSVKGKEDLADKSIAVNRGTLEDTSLTEAAPASADIKRFDNYNSVIQAFISGQTQLM 192 Query: 187 ATGNVVAAAIIAKNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAEAKKDGSLNA 246 GN V A ++AK KPE KF + SP IGLNK E L+ V+ +A+ DG L+ Sbjct: 193 VVGNDVGAQVLAKQDVLKPEQKFQLLTSPSHIGLNKNEDGLKKAVNDAIAKMLADGKLDE 252 Query: 247 ISQKWLGLPL 256 S+ WL PL Sbjct: 253 SSKAWLKTPL 262 >SMa0082 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sme Sinorhizobium meliloti Length = 271 Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 111/259 (42%), Positives = 162/259 (62%), Gaps = 3/259 (1%) Query: 1 MKLTKLLLGLLAGAMMFSASVAHADA--LDDIQKHGTLRVAVPADFPPFGSVDSDLKPQG 58 M +++ + + GA + + VA A A ++ I+ GT++V + DFPPFG +D++ +P G Sbjct: 7 MNISRRIAISVLGAAIVAGLVAPAAAQTVETIKSAGTVKVGMLVDFPPFGIMDANNQPDG 66 Query: 59 LDIDVAGLIAKKLGVKVELIPVSSANRIPYLTTRKVDLVISSMGKNAEREKVIDFTAAYA 118 D DVA L+AK+LGV+V ++PV+ NRIPYL + +VDL+++S+G ER K +DF+ YA Sbjct: 67 YDADVAKLLAKELGVEVTIVPVTGPNRIPYLQSNQVDLLVASLGITEERAKNVDFSQPYA 126 Query: 119 PFFNGVFGPADLPVKSAADLAGKTIAVTRGSVEDLELSKIVPASATVKRYEDNNSTISSF 178 GVFG ADL V DLAGKTI V R S +D +KI P A ++R++D+ S + + Sbjct: 127 GISIGVFGAADLAVTKPEDLAGKTIGVARASTQDTATTKIAPQDANIQRFDDDASAVQAL 186 Query: 179 LSGQVQLVATGNVVAAAIIAKNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAEA 238 LSGQV+L+ NVVAA I A P + + K + I + KG ++ V+ L + Sbjct: 187 LSGQVELIGVSNVVAAQIEAAAPGRFNQ-KLQLSQQVQGIAVRKGSSEMLKFVNGFLDKV 245 Query: 239 KKDGSLNAISQKWLGLPLP 257 K DG LNAI +KWLG PLP Sbjct: 246 KADGQLNAIHEKWLGSPLP 264