BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4101.p (290 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1229 [K] COG2207 AraC-type DNA-binding domain-containing prote... 280 3e-75 AGpA810 [K] COG2207 AraC-type DNA-binding domain-containing prot... 261 2e-69 mll3235 [K] COG2207 AraC-type DNA-binding domain-containing prot... 258 8e-69 yeaM [K] COG2207 AraC-type DNA-binding domain-containing protein... 229 4e-60 ZyeaM [K] COG2207 AraC-type DNA-binding domain-containing protei... 225 8e-59 >PA1229 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 268 Score = 280 bits (716), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 137/257 (53%), Positives = 182/257 (70%), Gaps = 4/257 (1%) Query: 12 DPDRLSAAVTALRVYTNHNERETPLHSHRKGQLVVALHGAVTCETTQGMWIVPPQSAVWI 71 DPD L AL++ HN+ E P+H HRKGQLVVA G +TC G+W+VP VWI Sbjct: 14 DPDALGQPALALQLEARHNDTEVPVHRHRKGQLVVACRGGITCTVPDGLWMVPAGFGVWI 73 Query: 72 PPGVPHSNRVTPDGQLCFLFIAPHATSLPDHCCTLALTPLLVQMICHLAELPQDYAPHER 131 P G+ HSNRVT +G++CFLF+ P A LP CCTLAL+PL++++I HL+ PQDY PH+ Sbjct: 74 PGGIAHSNRVTANGKVCFLFVEPGAARLPSDCCTLALSPLVLELILHLSAQPQDY-PHDG 132 Query: 132 -TARLAAVLVEELESSQRHVLPLHLPMPQHWRLREIARHLSEHPADRSTVAEWGQRHAMS 190 ARLA VL+E LE Q L+LP+P + LR IA L+ P DR+++AEW +R AMS Sbjct: 133 PLARLAGVLLELLE--QAPTEQLYLPLPDNRGLRRIADELTRAPGDRASMAEWARRVAMS 190 Query: 191 ERSFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRVSQDLGYDSVSAFITMFKKT 250 ERS AR V+ ETGM+FG+WR+Q+ +++ALQ+L++G SVQR ++ LGY+SVS+FI MF+K Sbjct: 191 ERSLARMVRRETGMTFGQWRQQLQIIIALQQLSAGVSVQRTAEILGYESVSSFIGMFRKA 250 Query: 251 LGKPPARYMAQRQAPPA 267 LG PPARY+ PA Sbjct: 251 LGSPPARYVRDSMRRPA 267 >AGpA810 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 268 Score = 261 bits (666), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 129/257 (50%), Positives = 177/257 (68%), Gaps = 4/257 (1%) Query: 3 TLYASLIEHDPDRLSAAVTALRVYTNHNERETPLHSHRKGQLVVALHGAVTCETTQGMWI 62 +L +L +HD + SAAV ++R+ + NERE P H HRKGQLV+ L G VTC GMW+ Sbjct: 11 SLSGALADHDLENSSAAVRSVRIDVSQNEREAPEHQHRKGQLVMPLRGGVTCRVPSGMWM 70 Query: 63 VPPQSAVWIPPGVPHSNRVTPDGQLCFLFIAPHATSLPDHCCTLALTPLLVQMICHLAEL 122 VPP VW+P G+ HSN T + +L FLFI P A LP+ CCTL+L+PL+ ++I LA+ Sbjct: 71 VPPHCGVWVPGGMLHSNVATANARLFFLFIEPGAADLPNRCCTLSLSPLVRELIIELAD- 129 Query: 123 PQDYAPHERTARLAAVLVEELESSQRHVLPLHLPMPQHWRLREIARHLSEHPADRSTVAE 182 Q + + +L+ L S+ V LHLP+ RL IA L++ P+DRST+A+ Sbjct: 130 -QSEVATADSELMTTLLLSAL--SRMPVEHLHLPLTDEPRLARIASELADDPSDRSTMAQ 186 Query: 183 WGQRHAMSERSFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRVSQDLGYDSVSA 242 W +R AMSE S AR VQ +TG++FGRWR+Q+ L++A++ LASG++VQ+VS DLGY+SVSA Sbjct: 187 WARRVAMSENSLARLVQHQTGLTFGRWRQQLQLIIAIRSLASGATVQQVSGDLGYESVSA 246 Query: 243 FITMFKKTLGKPPARYM 259 FITMFKK LG P+RY+ Sbjct: 247 FITMFKKALGTSPSRYL 263 >mll3235 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 268 Score = 258 bits (660), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 130/252 (51%), Positives = 173/252 (68%), Gaps = 5/252 (1%) Query: 9 IEHDPDRLSAAVTALRVYTNHNERETPLHSHRKGQLVVALHGAVTCETTQGMWIVPPQSA 68 ++ D D + A A+RV + E H HRKGQLV AL G+VTC G+W+VPP Sbjct: 10 LDFDVDDVLAPAIAIRVDVTETKAEVSQHWHRKGQLVFALSGSVTCRVPSGLWMVPPHCG 69 Query: 69 VWIPPGVPHSNRVTPDGQLCFLFIAPHATSLPDHCCTLALTPLLVQMICHLAELPQDYAP 128 VW+P + HSN T + ++ F++I P A LPD CCTL+++PLL ++I L++ D A Sbjct: 70 VWVPSRMQHSNIATANARIFFVYIEPGAAELPDRCCTLSISPLLRELIIELSDCAPDDA- 128 Query: 129 HERTARLAAVLVEELESSQRHVLPLHLPMPQHWRLREIARHLSEHPADRSTVAEWGQRHA 188 R A L +VL+ EL V LHLP+ RL+ IA L+ PADRST+AEWG+R A Sbjct: 129 --RCAFLGSVLLAEL--PDMPVQQLHLPISSEPRLKRIAEALANDPADRSTLAEWGKRVA 184 Query: 189 MSERSFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRVSQDLGYDSVSAFITMFK 248 +SE S AR V ETG+SFGRWR+Q+HL++A++ LASG+SVQRVS DLGY+SV+AFITMFK Sbjct: 185 LSESSLARLVVKETGLSFGRWRQQLHLIVAIRELASGASVQRVSGDLGYESVTAFITMFK 244 Query: 249 KTLGKPPARYMA 260 K LGKPPA+Y++ Sbjct: 245 KALGKPPAQYLS 256 >yeaM [K] COG2207 AraC-type DNA-binding domain-containing proteins Eco Escherichia coli K12 Length = 273 Score = 229 bits (585), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 113/255 (44%), Positives = 162/255 (63%), Gaps = 2/255 (0%) Query: 7 SLIEHDPDRLSAAVTALRVYTNHNERETPLHSHRKGQLVVALHGAVTCETTQGMWIVPPQ 66 +L ++PDR A A ++ +E +P+H HRKGQL++ALHGA+TC +W+VPPQ Sbjct: 6 NLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPPQ 65 Query: 67 SAVWIPPGVPHSNRVTPDGQLCFLFIAPHATSLPDHCCTLALTPLLVQMICHLAELPQDY 126 AVWIP GV HSN+VT + +LCFLFI P A ++P CCTL ++PL ++I LA Sbjct: 66 YAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTCCTLKISPLCRELILTLANRTTTQ 125 Query: 127 APHERTARLAAVLVEELESSQRHVLPLHLPMPQHWRLREIARHLSEHPADRSTVAEWGQR 186 T RL VL +EL + L L + H ++R + +++ P + + +W Sbjct: 126 RAEPMTRRLIQVLFDELPQQPQQQLHLPV--SSHPKIRTMVEMMAKGPVEWGALGQWAGF 183 Query: 187 HAMSERSFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRVSQDLGYDSVSAFITM 246 AMSER+ AR + ETG+SF +WR+Q+ L++ALQ L G +VQ+V+ LGYDS +AFITM Sbjct: 184 FAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITM 243 Query: 247 FKKTLGKPPARYMAQ 261 FKK LG+ P RY+A+ Sbjct: 244 FKKGLGQTPGRYIAR 258 >ZyeaM [K] COG2207 AraC-type DNA-binding domain-containing proteins EcZ Escherichia coli O157:H7 EDL933 Length = 273 Score = 225 bits (574), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 112/254 (44%), Positives = 160/254 (62%), Gaps = 2/254 (0%) Query: 7 SLIEHDPDRLSAAVTALRVYTNHNERETPLHSHRKGQLVVALHGAVTCETTQGMWIVPPQ 66 +L ++PDR A A ++ +E +P+H HRKGQL++ALHGA+TC +W+VPPQ Sbjct: 6 NLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPPQ 65 Query: 67 SAVWIPPGVPHSNRVTPDGQLCFLFIAPHATSLPDHCCTLALTPLLVQMICHLAELPQDY 126 AVWIP GV HSN+VT + +LCFLFI P A ++P C TL ++PL ++I LA Sbjct: 66 YAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTCYTLKISPLCRELILTLANRTTTQ 125 Query: 127 APHERTARLAAVLVEELESSQRHVLPLHLPMPQHWRLREIARHLSEHPADRSTVAEWGQR 186 T RL VL +EL + L L + H ++R + +++ P + + +W Sbjct: 126 RAEPMTRRLIQVLFDELPQQPQQQLHLPV--SSHPKIRAMVEMMAKEPVEWGALGQWAGF 183 Query: 187 HAMSERSFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRVSQDLGYDSVSAFITM 246 AMSER+ AR + ETG+SF +WR+Q+ L++ALQ L G +VQ+V+ LGYDS +AFITM Sbjct: 184 FAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITM 243 Query: 247 FKKTLGKPPARYMA 260 FKK LG+ P RY+A Sbjct: 244 FKKGLGQTPGRYIA 257