BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4097.p         (314 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF2089 Non COG                                                        268   2e-71
NMB2015 Non COG                                                        62   2e-09
NMA0425 Non COG                                                        62   2e-09
CT650 [L] COG0468 RecA/RadA recombinase Ctr Chlamydia trachomatis      32   2.5  
SPAC11D3.15_2 [EQ] COG0146 N-methylhydantoinase B/acetone carbox...    31   3.0  

>XF2089 Non COG
          Length = 319

 Score =  268 bits (684), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 147/312 (47%), Positives = 200/312 (64%), Gaps = 17/312 (5%)

Query: 1   MPYDLSDKLVIGISSRALFDLEAENAIYDEQGVDAYAEYQRAHENDPLQPGTAFPLVKAL 60
           MP      L + ++SRALFDLE  +A+++  GVDAYA YQR HE+D LQPG AFP+V+ L
Sbjct: 1   MPDHSHRLLTVAVTSRALFDLEEGHALFERDGVDAYAHYQREHEDDVLQPGVAFPVVRKL 60

Query: 61  LRLN-DLIPERRLVEVVVISRNTPDTGLRAFNAIAAHKLDISRAAFTGGGATAPYLQAFK 119
           L LN   + E   VEV+++SRN+ DTGLR FN+I  + L I RA FT G AT PY++ F 
Sbjct: 61  LALNRGALAEMPRVEVILLSRNSADTGLRIFNSIQHYGLGIVRATFTSGEATWPYVKPFG 120

Query: 120 IDLFLSRDTGDVQEAIDAGVAAAQLYAAPL-------------DYSAPDNQIRIAFDGDA 166
            DLFLS +   V+ A++ G+AAA +    L             + S+   Q+RIAFDGDA
Sbjct: 121 TDLFLSANPVSVRRALEHGIAAATIMPRMLGERVEAAAAVADNECSSLPVQLRIAFDGDA 180

Query: 167 VLFSAESERIFAEKGLEAFARHEQRHRKKAMKEGPFAKLLLALSAIQKQFPPKQC-PVRI 225
           V+F  E ER+  E+G+EAF R+E+   ++ +  GPF   L AL A+Q  FP  +  P+R 
Sbjct: 181 VIFGDEGERMSREQGVEAFGRYERERAREPLTGGPFRNFLSALQALQAAFPSGEASPIRT 240

Query: 226 AIVTARNSPAHQRVIHTLRTWNVTVDEAFFLGGLNKAEVLQAFGAHMFFDDQEGHVQKA- 284
           A+VTAR++PAH+RVI TLR W V +DEA FLGG +K   L+AFGA +FFDD + ++  A 
Sbjct: 241 ALVTARSAPAHERVIRTLREWGVRLDEALFLGGRHKGPFLEAFGADIFFDDSQHNIDSAR 300

Query: 285 -AVVVPSGRVPY 295
               V +G VP+
Sbjct: 301 QHQSVAAGHVPH 312


>NMB2015 Non COG
          Length = 89

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query: 1  MPYDLSDKLVIGISSRALFDLEAENAIYDEQGVDAYAEYQRAHENDPLQPGTAFPLVK 58
          M YDLS +LVIG++S ALFDL   + I+  +G + Y +YQR  +N PL+   +F L+K
Sbjct: 25 MSYDLSKRLVIGLASSALFDLSESDNIFRMEGAETYRQYQREKQNHPLKKALSFHLLK 82


>NMA0425 Non COG
          Length = 89

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query: 1  MPYDLSDKLVIGISSRALFDLEAENAIYDEQGVDAYAEYQRAHENDPLQPGTAFPLVK 58
          M YDLS +LVIG++S ALFDL   + I+  +G + Y +YQR  +N PL+   +F L+K
Sbjct: 25 MSYDLSKRLVIGLASSALFDLSESDNIFRMEGAETYRQYQREKQNHPLKKALSFHLLK 82


>CT650 [L] COG0468 RecA/RadA recombinase Ctr Chlamydia trachomatis
          Length = 352

 Score = 31.6 bits (70), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 7/62 (11%)

Query: 208 ALSAIQKQFPPKQCPVRIAIVTARNSPAHQRVIHTLRTWNVTVDEAFFLGGLNKAEVLQA 267
           A++ I+KQF          +   ++S AH+  I T++T  +++D A  +GG+ K  +++ 
Sbjct: 13  AIAYIEKQFGAGSI-----MSLGKHSSAHE--ISTIKTGALSLDLALGIGGVPKGRIVEI 65

Query: 268 FG 269
           FG
Sbjct: 66  FG 67


>SPAC11D3.15_2 [EQ] COG0146 N-methylhydantoinase B/acetone carboxylase, alpha
           subunit Spo Schizosaccharomyces pombe
          Length = 570

 Score = 31.2 bits (69), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 44  ENDPLQPGTAFPLVKALLRLNDLIPERRLVEVV----VISRNTPDTGLRAFNAIAAHKLD 99
           EN PL  G   P +K ++  N  +       VV    + S+   DT L+AF A AA + D
Sbjct: 308 ENIPLNQGCLLP-IKVIIPDNCFLKPSETAAVVGGNVLTSQRITDTILKAFQACAASQGD 366

Query: 100 ISRAAFTGGG 109
            +   F  GG
Sbjct: 367 TNNLTFGIGG 376