BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4096.p (233 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0071 [K] COG2186 Transcriptional regulators Bme Brucella me... 137 1e-32 AGc4967 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 134 2e-31 AGl3331 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 134 2e-31 SMb20106 [K] COG2186 Transcriptional regulators Sme Sinorhizobiu... 132 5e-31 RSc1078 [K] COG2186 Transcriptional regulators Rso Ralstonia sol... 127 3e-29 >BMEII0071 [K] COG2186 Transcriptional regulators Bme Brucella melitensis Length = 270 Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/226 (42%), Positives = 135/226 (59%), Gaps = 11/226 (4%) Query: 10 LSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGS 69 L + +ARQ+ + I G F GSKLP+E L+ ++GVSR VVREA+++LK +G+VE R GS Sbjct: 40 LPEEIARQIEKRILDGEFSVGSKLPSERELSVEYGVSRPVVREALSQLKLDGLVEARAGS 99 Query: 70 GVFVTEQAGIKPLRIDYTEVSSPQAVLQIVELRRAIEAEVAAQAAKRRSDEDLQAIEAAL 129 GVFV +++ K RI V Q++ Q++EL AIE AA R+ EDL+ I+ AL Sbjct: 100 GVFVIDESNQKAFRIQPLVVEEAQSLEQLMELLVAIEVAATRIAAVNRTPEDLKQIKRAL 159 Query: 130 AQIGVDVAAGGD--GVAADVAFHRALAQATRNPYFI---KTLEFLSQY-LEAATAITRGN 183 IG++ A D G D AFH A+ AT NP+FI K LE+ +++ + A TR N Sbjct: 160 --IGLEYAIISDKLGDEEDYAFHDAIVIATHNPHFIALCKHLEYGARHVIRQARTNTRSN 217 Query: 184 EARYEDFSRQVREEHEAIVAAIRAGDEMAARNAAQTHMFNAARRLS 229 +D V++EH+AI AI GD A AA+ H+ NA +R+ Sbjct: 218 ---LKDMLDAVQDEHKAIYEAIELGDPEQAGIAAERHLRNATQRMK 260 >AGc4967 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 238 Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 10 LSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGS 69 L +A ++ I+ G +LPTE VLA+ FGVSR+V+REAIA+L++EG VE RQG Sbjct: 14 LPGRIAAEIAREINDSQLGPGDRLPTEHVLAKTFGVSRSVIREAIAQLRNEGFVETRQGV 73 Query: 70 GVFVTEQAGIKPLRIDYTEVSSPQAVLQIVELRRAIEAEVAAQAAKRRSDEDLQAIEAAL 129 G FVT+ +RI+ + ++ P+ +++LR ++E + A AA E L+ + A+ Sbjct: 74 GAFVTDPRQRLSIRIEQSTLNDPENFRDLMQLRMSLEIDAAGLAALHHKPEHLEKFDKAI 133 Query: 130 AQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAA--TAITRGNEARY 187 + + DGV AD+ FHR +AQAT N YF+ L F++Q + +A TA +R A Y Sbjct: 134 YGMRNAIEWSKDGVEADLDFHRTMAQATGNEYFLIFLGFIAQRISSAINTAFSR---AVY 190 Query: 188 EDFSRQVREEHEAIVAAIRAGDEMAARNAAQTHMFNAARRLS 229 + EH + AI + + AR+A + H+ AARRL+ Sbjct: 191 GEILEITINEHVVLRDAIASRNVALARDAMRQHILGAARRLN 232 >AGl3331 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 245 Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 92/220 (41%), Positives = 130/220 (59%), Gaps = 10/220 (4%) Query: 14 VARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGSGVFV 73 V+ +L I G + G +LP+EA + Q+FGVSRTVVREA+A L+ +G+VEPRQG+GVFV Sbjct: 21 VSEELRSQIAKGRYKTGDRLPSEAQMTQEFGVSRTVVREAVASLRSDGLVEPRQGAGVFV 80 Query: 74 TEQAGI--KPL-RIDYTEVSSPQAVLQIVELRRAIEAEVAAQAAKRRSDEDLQAIEAALA 130 E A + +P +D VSS +++++ELR A+E + A AA RRS + I A Sbjct: 81 LEPAPVERRPFHNVDLARVSS---LIEMLELRTAVEGDAAGLAAIRRSPAQEEKIIEAFD 137 Query: 131 QIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAIT-RGNEARYE- 188 A G AD AFH A+A+AT NP F + L+ L + A+ G E Sbjct: 138 AFRASAARGMPTAEADFAFHIAVAEATNNPRFSEFLQVLGPTVIPRRAVAENGAETVLSP 197 Query: 189 -DFSRQVREEHEAIVAAIRAGDEMAARNAAQTHMFNAARR 227 D SR V EHEAI+ AI+ G+E AAR+A ++H+ ++ R Sbjct: 198 ADLSRLV-GEHEAILIAIQDGNEDAARSAMRSHLKSSQTR 236 >SMb20106 [K] COG2186 Transcriptional regulators Sme Sinorhizobium meliloti Length = 243 Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/229 (39%), Positives = 135/229 (58%), Gaps = 13/229 (5%) Query: 9 ALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQG 68 + +D V ++L +I G F G++LPTE LA++FGVSR VVREA+ARL+ +G+VE R+G Sbjct: 18 SYADQVYGRILHDILNGIFQPGARLPTENELAERFGVSRPVVREALARLRVDGLVEARRG 77 Query: 69 SGVFVTEQAGIK-PLRIDYTEVSSPQAVLQIVELRRAIEAEVAAQAAKRRSDEDLQAIEA 127 SG +V + P D ++S L+ ELR +E + AA AA+RR+++ L AI Sbjct: 78 SGTYVLSRPSQDLPNLADLEDISR---FLRYQELRFYVEGQAAALAAERRTEKQLAAILE 134 Query: 128 ALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLE----FLSQYLEAATAITR-G 182 A +V G +D FH A+ + T N +F K LE L+ ++ + A+TR G Sbjct: 135 AHEAFAHEVGRGAFLPESDRRFHLAICEGTGNEFFAKALEGPEVSLTSFMNVSLALTRSG 194 Query: 183 NEARYEDFSRQVREEHEAIVAAIRAGDEMAARNAAQTHMFNAARRLSQG 231 ++AR +R+V EH IV AIR D + AR A +TH+ NA RR++ G Sbjct: 195 SQAR----ARRVIAEHAEIVEAIRTKDAVWARVAMETHIINARRRMTDG 239 >RSc1078 [K] COG2186 Transcriptional regulators Rso Ralstonia solanacearum Length = 255 Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 124/223 (55%), Gaps = 4/223 (1%) Query: 8 QALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQ 67 Q+L++ V + + I +G+ G KLPTE+ L GVSRTVVREAI+RL+ + ++E R Sbjct: 15 QSLAEAVVDHIGQRIASGSLRPGDKLPTESELMGMLGVSRTVVREAISRLQAKALIETRH 74 Query: 68 GSGVFVTEQAGIKPLRIDYTEVSSPQAVLQIVELRRAIEAEVAAQAAKRRSDEDLQAIEA 127 G G FV E +++ S+ Q +L ++ELR A+E E A AA+R + EDL + Sbjct: 75 GIGSFVLEPRAETAIQLGA--ASTLQDILAMLELRVALETECAGLAAQRATPEDLTGLRN 132 Query: 128 ALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYL--EAATAITRGNEA 185 AL D A+G D A+D+ FH A+A ATRN +F+ L+ L + L + A T+ Sbjct: 133 ALDAFEQDQASGSDSAASDLRFHLAIAHATRNQHFVAVLDQLGKTLIPRSRIAPTQVGYL 192 Query: 186 RYEDFSRQVREEHEAIVAAIRAGDEMAARNAAQTHMFNAARRL 228 + V EH +I AI D AAR A + H+ N+ RL Sbjct: 193 NTPESRATVSREHRSIYEAISRQDPEAARAAMRMHLSNSRERL 235