BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4090.p (203 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1404 [NT] COG1871 Chemotaxis protein stimulates methylation ... 215 5e-56 PA0174 [NT] COG1871 Chemotaxis protein stimulates methylation o... 206 3e-53 CC0438 [NT] COG1871 Chemotaxis protein stimulates methylation o... 139 6e-33 VCA1090 [NT] COG1871 Chemotaxis protein stimulates methylation ... 134 1e-31 SMc03012 [NT] COG1871 Chemotaxis protein stimulates methylation... 128 8e-30 >RSp1404 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Rso Length = 233 Score = 215 bits (547), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 102/181 (56%), Positives = 138/181 (76%), Gaps = 2/181 (1%) Query: 12 ASYVYHDKAFDCATAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVTGVGGMNHFMLPD 71 +++ Y+D F K+LPGEY+ T ED+M+VTVLGSCVSAC+RD++ G+GGMNHFMLP Sbjct: 38 STHAYYDTTFSRRAMKVLPGEYYVTTEDLMLVTVLGSCVSACVRDKLLGIGGMNHFMLPS 97 Query: 72 GGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMTAMNVGERN 131 E++S +S SMRYGT+AMEVL+N + +AGARRE+LE KVFGG AVL GM+ ++VGERN Sbjct: 98 RN-ESESILSPSMRYGTHAMEVLLNQLYRAGARREHLEIKVFGGAAVLAGMSTLDVGERN 156 Query: 132 AAFVKNYLSAEKIRVVAEDLNDVWPRKVHFFPRTGKVLVKKIKDAG-ADLVSREREYASK 190 FV +L +E + V A+DL DV PRKV+F P TG+++V+K++ G A + E +YASK Sbjct: 157 GKFVLEFLRSEGLPVAAKDLFDVHPRKVYFVPSTGQIMVRKLRSQGSAAELDSEAQYASK 216 Query: 191 L 191 L Sbjct: 217 L 217 >PA0174 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Pae Length = 200 Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 101/189 (53%), Positives = 135/189 (71%), Gaps = 3/189 (1%) Query: 16 YHDKAFDCATAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVTGVGGMNHFMLPDGGGE 75 Y+D F C K+LPGEYF +GED++IVTVLGSCVS CLRD + G+ GMNHFMLP+ G Sbjct: 14 YYDPYFACDAVKLLPGEYFASGEDLVIVTVLGSCVSVCLRDPLNGIAGMNHFMLPERGLG 73 Query: 76 ADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMTAMNVGERNAAFV 135 D P S S RYG++AME+LIN +L GA RE L+ KVFGGG+VLR ++A +G+RN F Sbjct: 74 GD-PASPSARYGSHAMELLINRMLALGASRERLQAKVFGGGSVLRQISAA-IGQRNVEFT 131 Query: 136 KNYLSAEKIRVVAEDLNDVWPRKVHFFPRTGKVLVKKIKDAGADLV-SREREYASKLQAK 194 +YL+ E+I ++A D+ + +PRK++FFPR G+VLVK + + D V RER+Y ++ Sbjct: 132 LDYLATERIPLLASDVLEAFPRKIYFFPRNGRVLVKSLVELKNDTVLQRERDYRRRIDRN 191 Query: 195 PVGGEIDLF 203 GG IDLF Sbjct: 192 ADGGPIDLF 200 >CC0438 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Ccr Length = 187 Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 79/192 (41%), Positives = 113/192 (58%), Gaps = 13/192 (6%) Query: 16 YHDKAFDCATAKILPGEYFYTGE-DMMIVTVLGSCVSACLRDRVTGVGGMNHFMLPDGG- 73 +HD + GE T + ++++ TVLGSC++AC+RD +GVGGMNHF+LPD G Sbjct: 5 HHDDPERAVKVHVTQGESHVTADPNVVMTTVLGSCIAACIRDPQSGVGGMNHFLLPDSGD 64 Query: 74 GEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMTAMNVGERNAA 133 G D ++RYG YAMEVLIND+LK GARRE LE K+FGG + G++ +VG NAA Sbjct: 65 GRRDG---DAVRYGAYAMEVLINDLLKRGARRERLEAKIFGGAKLFDGLS--DVGASNAA 119 Query: 134 FVKNYLSAEKIRVVAEDLNDVWPRKVHFFPRTGKVLVK--KIKDAGADLVSREREYASKL 191 F + +L E I +V+ V R+V F+P +G+V + + +A D+ R Sbjct: 120 FAERFLRDEGIPIVSSSTGGVSARRVEFWPASGRVRQRLVAVDNAPQDV----RRPTPPP 175 Query: 192 QAKPVGGEIDLF 203 G++DLF Sbjct: 176 MPAVASGDVDLF 187 >VCA1090 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Vch Length = 233 Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 79/184 (42%), Positives = 108/184 (58%), Gaps = 9/184 (4%) Query: 27 KILPGEYFYTGEDMMIVTVLGSCVSACLRDRVTGVGGMNHFMLP------DGGGEADSPV 80 K++PG + T + +I T LGSCVSAC D VGGMNHF+LP + + Sbjct: 51 KVMPGGVYATSDQEIIHTGLGSCVSACAWDIEMKVGGMNHFLLPFNNQFESQHWHPQALL 110 Query: 81 SASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMTAMNVGERNAAFVKNYLS 140 S S RYG YAMEVLIN +L GA RE L+ K+FGG A L G ++ VGE+N FV Y Sbjct: 111 SDSSRYGCYAMEVLINRLLSMGAERERLKFKLFGG-AHLMGYQSL-VGEKNVEFVLEYAK 168 Query: 141 AEKIRVVAEDLNDVWPRKVHFFPRTGKVLVKKIKDAGADLVSRERE-YASKLQAKPVGGE 199 EK+ VVA+DL PRK+ F P+TG+ VK+I + A + ++ E Y + + + Sbjct: 169 REKLNVVAQDLGGAQPRKLLFDPQTGQAWVKRIGFSSAHAIKQDEELYQHSIDKQIPSDD 228 Query: 200 IDLF 203 ++LF Sbjct: 229 VELF 232 >SMc03012 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Sme Length = 183 Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 66/143 (46%), Positives = 94/143 (65%), Gaps = 8/143 (5%) Query: 28 ILPGEYFYTGE-DMMIVTVLGSCVSACLRDRVTGVGGMNHFMLPDGGGEADSPVSA--SM 84 ++ GE+ + D+++ T+LGSCV+AC+RD GVGGMNHF+LP G A SP S + Sbjct: 12 VIQGEFKVVNDPDIVLSTILGSCVAACMRDPAAGVGGMNHFLLP---GSATSPSSGADAT 68 Query: 85 RYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMTAMNVGERNAAFVKNYLSAEKI 144 RYG + ME+LIN +LK GARR+ LE K+FGG + + NVGE+NAAF + +L E I Sbjct: 69 RYGVHLMELLINGLLKQGARRDRLEAKIFGGARTIARFS--NVGEQNAAFARQFLMDEGI 126 Query: 145 RVVAEDLNDVWPRKVHFFPRTGK 167 R+V E RK+ ++P +G+ Sbjct: 127 RIVGESTGGDHGRKLEYWPSSGR 149