BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4085.p (597 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1229 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 548 e-155 RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 523 e-148 RSc3307 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 471 e-132 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 262 2e-69 STM3577 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 249 1e-65 >YPO1229 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 595 Score = 548 bits (1412), Expect = e-155, Method: Compositional matrix adjust. Identities = 309/599 (51%), Positives = 411/599 (68%), Gaps = 7/599 (1%) Query: 1 MLTSIRARVVCAFVALVVFSVVVSTATNYLIARDSMWDATDSNLSTSVSDHARVIGDWVA 60 ML SIR+R++ A + +V S+ ++T NY +A A D+ L+ H+ I +WVA Sbjct: 1 MLDSIRSRILAACIIIVAGSLAINTFLNYSVANKYNNSAIDNTLTALTVSHSVSIAEWVA 60 Query: 61 EKTHLVDSLQDVVLTDSPDAMLKQIQVAGGFYDVGVGYPDKKTKFTDWPNIPATYDPTSR 120 KT ++ SL+D LT P A LKQ+ AGGF +V +GY DK F++ IPA YDPT R Sbjct: 61 SKTQMIMSLKDSALTADPLAALKQVAAAGGFINVYIGYADKTAIFSNPDGIPADYDPTGR 120 Query: 121 PWYKGAVQAGKPAAIP-YIST-SKLLLVALAIPVMREGTLKAVLVGDVALDSVVDTIKSI 178 PWY AV AGKP P YI ++ L+V A ++++G LK V+ DV + SV+ + +I Sbjct: 121 PWYLQAVNAGKPVVTPPYIDAGTQQLVVTFAWSIVQDGVLKGVIAADVTMGSVIANVNAI 180 Query: 179 HPTPESFGMLIDQNGRIIAHPNADLRFKQVTDIAPEFS-QLISSAEGNTAAPMKIVVDGR 237 HPT SFGMLI +G IIAHP L K + DIAP + Q + +A P+ + G Sbjct: 181 HPTDNSFGMLIGADGTIIAHPETLLTLKPLADIAPNLNLQTLLTA----TVPVSTDISGS 236 Query: 238 TKLVRAQKIRGTDWSIVIAIDEAEAMAGARSLLNASLLALLLIVGIASMIGVAVTTKAFR 297 +KL+ AQ + GT W V+A+D+++A AG SLL SL+ L++I+ I++ + +T +A Sbjct: 237 SKLLLAQAVPGTQWFTVVALDKSQATAGIHSLLTTSLVTLVIIIFISAGVIALITQRALT 296 Query: 298 RLGQVSQAMTAIGSGSGDLTQRLPDQGKDEVAIISRSFNQFVGQLQNVMLDIHEASEAVR 357 L + QAM AI SGS DLTQRLP +G+DEVA I+RSFNQF +L VM I SE+VR Sbjct: 297 PLTHIQQAMDAISSGSADLTQRLPIEGRDEVAQIARSFNQFADKLSLVMAQIRGTSESVR 356 Query: 358 TASNEIATANQDLSSRTESAAASLEQTAASMAEISETVGRSTAAAQEADQRSSTATEIAS 417 A+NEIA NQDLS RTESAAASL+QT+A++ +IS TV +S +AA++A+ +A+E AS Sbjct: 357 VAANEIAAGNQDLSGRTESAAASLQQTSAALEQISATVAQSASAARQANNAVFSASEDAS 416 Query: 418 QGGKVVSDAVSTMGEIEKVSGQIGAIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 477 +GG V++ ++TM IEK SG+IG I SVIDGIAFQTNILALNAAVEAARAGEQGRGFAV Sbjct: 417 RGGDVITKVITTMESIEKASGKIGDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 476 Query: 478 VAHEVRSLAQRSAEAAREVKELVETTVSRVSAGSVQVRQAGKTMGEIVTQSADVQSLISG 537 VA EVR LAQRSA+AA+E+K L+E+TVS V++GS QVRQA M +IV+ +DV +++S Sbjct: 477 VAGEVRILAQRSAQAAKEIKALIESTVSSVASGSSQVRQASNAMTDIVSSVSDVTTIMSE 536 Query: 538 IARATGEQTRGIQEVNRAVTQLDSMVQQNAALVEQSAAASATLQTQANTLASTIGRFRI 596 I A EQ RGI E+N AV QLD+MVQQNAALV++S AASA LQ QA L T+ +F+I Sbjct: 537 ITNAADEQMRGIHEINSAVAQLDTMVQQNAALVQESTAASAALQAQAADLTDTVNQFKI 595 >RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 617 Score = 523 bits (1346), Expect = e-148, Method: Compositional matrix adjust. Identities = 293/599 (48%), Positives = 404/599 (67%), Gaps = 2/599 (0%) Query: 1 MLTSIRARVVCAFVALVVFSVVVSTATNYLIARDSMWDATDSNLSTSVSDHARVIGDWVA 60 +L SIR R++ VA+VV ++ ++ NY++ R DA NL + H I DWVA Sbjct: 18 VLNSIRTRILLTCVAIVVGALTLAGGLNYVVTRSYNDDAIRQNLQSVARGHIAGIDDWVA 77 Query: 61 EKTHLVDSLQDVVLTDSPDAMLKQIQVAGGFYDVGVGYPDKKTKFTDWPNIPATYDPTSR 120 KT +V +LQD L+ P LK + +GGF V VGYPDK KF D +P TYDPT+R Sbjct: 78 SKTQMVVALQDAALSADPVPALKTVAASGGFISVYVGYPDKSYKFADPSGVPPTYDPTAR 137 Query: 121 PWYKGAVQAGKPAAIP-YISTSK-LLLVALAIPVMREGTLKAVLVGDVALDSVVDTIKSI 178 PWYK A +AGKP P Y+S S L+V A+P++R+G LK V+ DV++D+V+ +K+I Sbjct: 138 PWYKQAAEAGKPVVTPPYVSASTGKLVVTFAVPILRDGGLKGVVASDVSMDAVIANVKAI 197 Query: 179 HPTPESFGMLIDQNGRIIAHPNADLRFKQVTDIAPEFSQLISSAEGNTAAPMKIVVDGRT 238 HPTP SFG L++ G+I+AHP+ K VTD++ + S +A T P+++ V G Sbjct: 198 HPTPASFGFLVNAAGKIVAHPDDKFTLKPVTDLSADLSDATLAALAQTDKPLQVNVGGAA 257 Query: 239 KLVRAQKIRGTDWSIVIAIDEAEAMAGARSLLNASLLALLLIVGIASMIGVAVTTKAFRR 298 KL+ Q ++GTDW +V+A+D+++A AG RSL+ S+ L+++ +A+ I A+T +AFRR Sbjct: 258 KLLHRQGVQGTDWGLVVALDKSDATAGMRSLVTTSIGVLVVVALVAAAIVGAMTARAFRR 317 Query: 299 LGQVSQAMTAIGSGSGDLTQRLPDQGKDEVAIISRSFNQFVGQLQNVMLDIHEASEAVRT 358 L + AM IGSGSGDLT+RLP G+DEVA I+RSFN F +L V+ I S++VR+ Sbjct: 318 LSMIRDAMDDIGSGSGDLTKRLPADGQDEVAQIARSFNAFADKLTAVLQQIRLGSDSVRS 377 Query: 359 ASNEIATANQDLSSRTESAAASLEQTAASMAEISETVGRSTAAAQEADQRSSTATEIASQ 418 A+ EIA N DLS RTE A+SLE+TA+SM E++ V ++ A++A + A+++A++ Sbjct: 378 AAQEIAAGNADLSQRTEEQASSLEETASSMEELTSIVKQNADNARQASSLAVNASDVATR 437 Query: 419 GGKVVSDAVSTMGEIEKVSGQIGAIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 478 GG VV V TMG I + S +I II VI+ IAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 438 GGSVVGQVVQTMGGINESSKKIADIIGVIESIAFQTNILALNAAVEAARAGEQGRGFAVV 497 Query: 479 AHEVRSLAQRSAEAAREVKELVETTVSRVSAGSVQVRQAGKTMGEIVTQSADVQSLISGI 538 A EVRSLAQRSA AA+E+K L+ +V RVS G+ V QAG TM EIV V ++ I Sbjct: 498 ASEVRSLAQRSAGAAKEIKALIHDSVDRVSNGTALVDQAGVTMAEIVEAVKRVTDIMGEI 557 Query: 539 ARATGEQTRGIQEVNRAVTQLDSMVQQNAALVEQSAAASATLQTQANTLASTIGRFRIS 597 + A+ EQ+ GI++VN+AV Q+D + QQNAALVEQ+AAA+ +L+ QA L +G FR+S Sbjct: 558 SAASEEQSSGIEQVNQAVNQMDQVTQQNAALVEQAAAAAESLEEQARNLNDAVGSFRLS 616 >RSc3307 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 646 Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust. Identities = 266/597 (44%), Positives = 380/597 (63%), Gaps = 3/597 (0%) Query: 2 LTSIRARVVCAFVALVVFSVVVSTATNYLIARDSMWDATDSNLSTSVSDHARVIGDWVAE 61 ++S+R R++ A V+ ++ +S A Y I R S + D NL+ S + I WV Sbjct: 48 MSSLRTRILVISSATVIGALALSGAATYAIVRASTLASIDQNLTAIASGNTLAIDKWVTA 107 Query: 62 KTHLVDSLQDVVLTDSPDAMLKQIQVAGGFYDVGVGYPDKKTKFTDWPNIPATYDPTSRP 121 K V + + V P ++K + A GF VG+ DK T F+ P YDPT+RP Sbjct: 108 KAQAVKATAEAVEYGDPHGLVKHMGDADGFPITTVGWTDK-TFFSTSAGTPKDYDPTARP 166 Query: 122 WYKGAVQAGKPAAI-PY-ISTSKLLLVALAIPVMREGTLKAVLVGDVALDSVVDTIKSIH 179 WYK A+ AGKP PY +++ + V+ A P+MR G L G V LD V + + ++H Sbjct: 167 WYKSAIAAGKPTVTKPYGDASTGVPYVSFAAPLMRNGAATGALSGAVPLDGVREVVAAVH 226 Query: 180 PTPESFGMLIDQNGRIIAHPNADLRFKQVTDIAPEFSQLISSAEGNTAAPMKIVVDGRTK 239 PTP S ++ ++G++IAHP+A L K VT+++ + ++ AP+++ + G K Sbjct: 227 PTPSSLAFVVARDGQVIAHPDAKLMLKPVTEVSAALTPDALTSLAKATAPLEVELAGAAK 286 Query: 240 LVRAQKIRGTDWSIVIAIDEAEAMAGARSLLNASLLALLLIVGIASMIGVAVTTKAFRRL 299 L++AQ ++GTDW +VIA+D+AEA AG RS+ A +A++L+ A I T ++FRRL Sbjct: 287 LLKAQAVQGTDWYLVIALDKAEATAGLRSVARALGVAMVLLTLAAVGIAAFFTAQSFRRL 346 Query: 300 GQVSQAMTAIGSGSGDLTQRLPDQGKDEVAIISRSFNQFVGQLQNVMLDIHEASEAVRTA 359 QV AM IGSG GDLT RLP G DEVA IS SFN F+ ++ V+L++ + E +++A Sbjct: 347 SQVRDAMDTIGSGGGDLTHRLPVVGNDEVAQISASFNTFIDKIGEVLLEVRASVENMKSA 406 Query: 360 SNEIATANQDLSSRTESAAASLEQTAASMAEISETVGRSTAAAQEADQRSSTATEIASQG 419 + EI N+DLS RTE++A++L++T+A++ E++ +V S AA +A + + A+E A +G Sbjct: 407 TGEIEMGNRDLSLRTETSASNLQETSAALTELTTSVKNSAEAAVQATRLAGEASEAAVRG 466 Query: 420 GKVVSDAVSTMGEIEKVSGQIGAIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 479 G+VVS AVSTM I + S +I II VID IAFQTNILALNAAVEAARAGE GRGFAVVA Sbjct: 467 GEVVSGAVSTMDAIAQSSSRISEIIGVIDSIAFQTNILALNAAVEAARAGENGRGFAVVA 526 Query: 480 HEVRSLAQRSAEAAREVKELVETTVSRVSAGSVQVRQAGKTMGEIVTQSADVQSLISGIA 539 EVR+LAQRSA AARE+K L++ + + V AG+ +V AG TM EIV V +I I Sbjct: 527 GEVRTLAQRSAAAAREIKALIQASEASVKAGAERVDAAGATMREIVEGIQRVSRIIGEID 586 Query: 540 RATGEQTRGIQEVNRAVTQLDSMVQQNAALVEQSAAASATLQTQANTLASTIGRFRI 596 A EQ+ GI +++R+V ++D QQNAALVEQS AAS+ L QA+ LA T+G FR+ Sbjct: 587 GAMHEQSAGISQIDRSVAEMDQATQQNAALVEQSTAASSMLNEQAHGLARTVGLFRL 643 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 262 bits (670), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 145/285 (50%), Positives = 206/285 (72%) Query: 313 SGDLTQRLPDQGKDEVAIISRSFNQFVGQLQNVMLDIHEASEAVRTASNEIATANQDLSS 372 +GDLTQ + G++EV ++ S +L ++ ++ ++A+ + ++EIA N DLS+ Sbjct: 234 NGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAIYSGASEIAVGNNDLSA 293 Query: 373 RTESAAASLEQTAASMAEISETVGRSTAAAQEADQRSSTATEIASQGGKVVSDAVSTMGE 432 RTE AASLE+TAASM +++ TV ++ A++A Q + +A+E A +GGKVV+D V TM E Sbjct: 294 RTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASETAQKGGKVVADVVQTMHE 353 Query: 433 IEKVSGQIGAIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAQRSAEA 492 I S +I I SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA+A Sbjct: 354 IAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQA 413 Query: 493 AREVKELVETTVSRVSAGSVQVRQAGKTMGEIVTQSADVQSLISGIARATGEQTRGIQEV 552 A+E+K L++ +V+RV GSV V AG+TMG+IV V ++ IA A+ EQ+RGI ++ Sbjct: 414 AKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMGEIASASDEQSRGIDQI 473 Query: 553 NRAVTQLDSMVQQNAALVEQSAAASATLQTQANTLASTIGRFRIS 597 +AV ++D + QQNA+LVE+SA+A+A+L+ QA+ L + F +S Sbjct: 474 GQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVFVLS 518 >STM3577 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 547 Score = 249 bits (637), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 143/283 (50%), Positives = 203/283 (71%) Query: 314 GDLTQRLPDQGKDEVAIISRSFNQFVGQLQNVMLDIHEASEAVRTASNEIATANQDLSSR 373 GDLT + +G+ E+ ++ L + + + ++++ T + EI+ + DLSSR Sbjct: 234 GDLTHEIEAEGRSEMGQLAAGLKTMQQSLIRTVSAVRDNADSIYTGAGEISAGSSDLSSR 293 Query: 374 TESAAASLEQTAASMAEISETVGRSTAAAQEADQRSSTATEIASQGGKVVSDAVSTMGEI 433 TE A++LE+TAASM +++ TV ++T A++A + TA+E A +GG+VV + VSTM +I Sbjct: 294 TEQQASALEETAASMEQLTATVRQNTDNARQATGLAKTASETARKGGRVVDNVVSTMNDI 353 Query: 434 EKVSGQIGAIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAQRSAEAA 493 + S +I I SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LA RSA+AA Sbjct: 354 AESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAA 413 Query: 494 REVKELVETTVSRVSAGSVQVRQAGKTMGEIVTQSADVQSLISGIARATGEQTRGIQEVN 553 +E+K L+E +VSR+ GS QVR+AG+TM EIV V ++ IA A+ EQ++GI++V Sbjct: 414 KEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVA 473 Query: 554 RAVTQLDSMVQQNAALVEQSAAASATLQTQANTLASTIGRFRI 596 +AV+++DS+ QQNA+LVE+SAAA+A L+ QAN L + FRI Sbjct: 474 QAVSEMDSVTQQNASLVEESAAAAAALEDQANELRQAVAAFRI 516