BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4066.p         (99 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TM1816 [S] COG1433 Uncharacterized conserved protein Tma Thermot...    35   0.045
PAE3198 Non COG                                                        30   1.2  

>TM1816 [S] COG1433 Uncharacterized conserved protein Tma Thermotoga
           maritima
          Length = 124

 Score = 35.0 bits (79), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 10  HFPYQPYFAHFKRTRKALAPANFVP-PWKQLRLTLYVRNLMR-KGAAFIWTRPDGRQFFC 67
           HF   PYFA  K    A+A  +    P  Q  +   V N ++ KGA  +  R  GR+   
Sbjct: 20  HFGRAPYFAFVKVKNNAIADISVEENPLAQDHVHGAVPNFVKEKGAELVIVRGIGRRAIA 79

Query: 68  KTMRQLVARIMDYDGYILHTIFQYKNGRL 96
                 V  I    G +   + QY +G+L
Sbjct: 80  AFEAMGVKVIKGASGTVEEVVNQYLSGQL 108


>PAE3198 Non COG
          Length = 1275

 Score = 30.0 bits (66), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 5    ELPLLHFPYQPYFAHFKRTRKALAPANFVPPWKQLRLTLY 44
            EL L +FP  P ++ + RTR+ L    FVPP    R+  Y
Sbjct: 1200 ELILQYFPRAPSYSGW-RTREILLQLTFVPPMPDPRIIEY 1238