BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4032.p         (160 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0358 [J] COG0219 Predicted rRNA methylase (SpoU class) Rso Ra...   259   2e-69
NMB0268 [J] COG0219 Predicted rRNA methylase (SpoU class) Nme Ne...   206   2e-53
NMA2218 [J] COG0219 Predicted rRNA methylase (SpoU class) NmA Ne...   204   6e-53
PA5127 [J] COG0219 Predicted rRNA methylase (SpoU class) Pae Pse...   192   3e-49
YPO0071 [J] COG0219 Predicted rRNA methylase (SpoU class) Ype Ye...   187   8e-48

>RSc0358 [J] COG0219 Predicted rRNA methylase (SpoU class) Rso Ralstonia
           solanacearum
          Length = 156

 Score =  259 bits (661), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/160 (77%), Positives = 140/160 (87%), Gaps = 4/160 (2%)

Query: 1   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVH 60
           +F+VVLVEPEIPPNTGN+IRLCANTGAQLHL+EPLGFPL+DA+MRRAGLDYHEYA M+VH
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVH 60

Query: 61  PDWDSFLAQRRQDPPFDARRMFAMTTHGSTPFAGLAFQPGDTFVFGSETRGLAPERRESF 120
             WD+FL   + DP     RMFA+TT GSTPFAGLAFQPGD FVFGSETRGL+ ERR  F
Sbjct: 61  ASWDAFLRDAQPDPA----RMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEERRAGF 116

Query: 121 PTAQRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGYEGGS 160
           P +QRIRLPMRP NRS+NLSNTVAVVV+EAWRQNG+ GG+
Sbjct: 117 PPSQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQNGFAGGA 156


>NMB0268 [J] COG0219 Predicted rRNA methylase (SpoU class) Nme Neisseria
           meningitidis MC58
          Length = 154

 Score =  206 bits (524), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/159 (61%), Positives = 122/159 (76%), Gaps = 6/159 (3%)

Query: 1   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVH 60
           +F +VL +PEIPPNTGNIIRLCANTGA LHLV+PLGFPLD AKM+RAGLDYHE+A++ VH
Sbjct: 1   MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDYHEFASLTVH 60

Query: 61  PDWDSFLAQRRQDPPFDARRMFAMTTHGSTPFAGLAFQPGDTFVFGSETRGLAPERRESF 120
            ++D  L           RR+FA+TT G+      AFQ GD  +FG ETRGL  +  +S 
Sbjct: 61  ENFDDCLKA------LAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSL 114

Query: 121 PTAQRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGYEGG 159
           P AQ+IRLPM+PG+RS+NLSNTVAV+++EAWRQ+GY GG
Sbjct: 115 PAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQHGYAGG 153


>NMA2218 [J] COG0219 Predicted rRNA methylase (SpoU class) NmA Neisseria
           meningitidis Z2491
          Length = 154

 Score =  204 bits (519), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 122/159 (76%), Gaps = 6/159 (3%)

Query: 1   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVH 60
           +F +VL +PEIPPNTGNIIRLCANTGA LHLV+PLGFPLD AKM+RAGLDYHE+A++ V+
Sbjct: 1   MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDYHEFASLTVY 60

Query: 61  PDWDSFLAQRRQDPPFDARRMFAMTTHGSTPFAGLAFQPGDTFVFGSETRGLAPERRESF 120
            ++D  L           RR+FA+TT G+      AFQ GD  +FG ETRGL  +  +S 
Sbjct: 61  ENFDDCLKA------LAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSL 114

Query: 121 PTAQRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGYEGG 159
           P AQ+IRLPM+PG+RS+NLSNTVAV+++EAWRQ+GY GG
Sbjct: 115 PAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQHGYAGG 153


>PA5127 [J] COG0219 Predicted rRNA methylase (SpoU class) Pae Pseudomonas
           aeruginosa
          Length = 153

 Score =  192 bits (488), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/156 (60%), Positives = 115/156 (73%), Gaps = 6/156 (3%)

Query: 1   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVH 60
           +FHV+L +PEIPPNTGNIIRLCAN G  LHL+EPLGF LDD ++RRAGLDYHEYA+++ +
Sbjct: 1   MFHVILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRY 60

Query: 61  PDWDSFLAQRRQDPPFDARRMFAMTTHGSTPFAGLAFQPGDTFVFGSETRGLAPERRESF 120
           P   S L    Q       R+FA TT GS  F  +A+Q GD F+FG E+RGL  + R + 
Sbjct: 61  PYLQSCLEALGQP------RLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDVRNAL 114

Query: 121 PTAQRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGY 156
           PT +R+RLPMR G RS+NLSNTVAV VYEAWRQ G+
Sbjct: 115 PTDRRLRLPMREGCRSLNLSNTVAVTVYEAWRQLGF 150


>YPO0071 [J] COG0219 Predicted rRNA methylase (SpoU class) Ype Yersinia
           pestis
          Length = 162

 Score =  187 bits (475), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 117/159 (73%), Gaps = 1/159 (0%)

Query: 1   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVH 60
           + ++VL EPEIPPNTGNIIRLCANTG QLHL++PLGF  DD ++RRAGLDYHE+A+++ H
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHH 60

Query: 61  PDWDSFLAQRRQDPPFDARRMFAMTTHGSTPFAGLAFQPGDTFVFGSETRGLAPERRESF 120
            D+ +FL   + D    A R+FA+TT G+   + +++Q  D  +FG ETRGL     ++ 
Sbjct: 61  HDYQAFLDSEKLDSTQPA-RLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDAL 119

Query: 121 PTAQRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGYEGG 159
           P  Q+IR+PM+  +RS+NLSN V+VVVYEAWRQ GY G 
Sbjct: 120 PAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPGA 158