BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4025.p (199 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0365 [O] COG3175 Cytochrome oxidase assembly factor Rso Ralst... 256 2e-68 PA0107 [O] COG3175 Cytochrome oxidase assembly factor Pae Pseudo... 145 5e-35 BMEI1463 [O] COG3175 Cytochrome oxidase assembly factor Bme Bruc... 124 1e-28 mlr7495 [O] COG3175 Cytochrome oxidase assembly factor Mlo Mesor... 116 3e-26 AGc1406 [O] COG3175 Cytochrome oxidase assembly factor Atu Agrob... 115 9e-26 >RSc0365 [O] COG3175 Cytochrome oxidase assembly factor Rso Ralstonia solanacearum Length = 202 Score = 256 bits (654), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 123/193 (63%), Positives = 149/193 (77%), Gaps = 3/193 (1%) Query: 4 SSDP--DQEQPERGLNRVMLRKLVVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDATV 61 S DP D ERGLNR ML KL VV V+MFGFGYA++P+Y+KICE+T +N LT +D Sbjct: 7 SPDPTDDARAAERGLNRAMLGKLAVVVVMMFGFGYAMVPLYKKICELTNINVLTTRDLDG 66 Query: 62 EAPANSQVDKSRVVTVEFDGNAQGPWRFRPTVASLQVHPGEMTQVTYEVVNTQARNVDAQ 121 A N+QVD++R VTVEFD N+QGP+RFRP S++VHPGE+ Q+ YEVVN + R+V AQ Sbjct: 67 GALRNTQVDQARTVTVEFDSNSQGPFRFRPVKNSMEVHPGEINQIVYEVVNKEGRSVSAQ 126 Query: 122 AIPSYAPQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLPKDVTTITLSYTFFE 181 AIPSYAP+Q+ FFKK+ECFCF QQTL N++++MPVVF IDP LPKDV TITLSYTFFE Sbjct: 127 AIPSYAPKQATEFFKKIECFCFKQQTLAGNESREMPVVFVIDPDLPKDVKTITLSYTFFE 186 Query: 182 INGKDKAAGSTVP 194 I GK A TVP Sbjct: 187 I-GKPVAQTPTVP 198 >PA0107 [O] COG3175 Cytochrome oxidase assembly factor Pae Pseudomonas aeruginosa Length = 184 Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/171 (43%), Positives = 101/171 (59%), Gaps = 5/171 (2%) Query: 17 NRVMLRKLVVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDATVEAPANSQVDKSRVVT 76 R ++ +L++V VLMF FG+AL+P+Y +C G+N K A QVD R V Sbjct: 8 TRRLVGRLLLVTVLMFAFGFALVPLYDVMCRALGIN---GKTAGSAYSGEQQVDVGREVK 64 Query: 77 VEF--DGNAQGPWRFRPTVASLQVHPGEMTQVTYEVVNTQARNVDAQAIPSYAPQQSAAF 134 V+F N W FR L VHPG + Q+ + N + + AQAIPS AP ++AA+ Sbjct: 65 VQFMTSNNIDMVWEFRSAGDQLVVHPGAVNQMVFYARNPSDKPMTAQAIPSIAPAEAAAY 124 Query: 135 FKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLPKDVTTITLSYTFFEINGK 185 F K ECFCFTQQ L P ++ +MPV F +D LPKDV +TL+YT F+I + Sbjct: 125 FHKTECFCFTQQVLQPGESIEMPVRFIVDRDLPKDVRHVTLAYTLFDITAR 175 >BMEI1463 [O] COG3175 Cytochrome oxidase assembly factor Bme Brucella melitensis Length = 237 Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/201 (38%), Positives = 108/201 (53%), Gaps = 17/201 (8%) Query: 8 DQEQPERGLNRVMLRKLVVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDATVEAPANS 67 + E+ +R N + + V M G YA +P+YR C+VTG T + VE +++ Sbjct: 42 ENEKKQRRSNATIAVACLSFFVCMIGAAYASVPLYRIFCQVTGYGGTTQR---VEQYSDT 98 Query: 68 QVDKSRVVTVEFDGN-AQG-PWRFRPTVASLQVHPGEMTQVTYEVVNTQARNVDAQAIPS 125 +DK+ + V FD N A G PW F+P + V GE T + YE N +A + Sbjct: 99 ILDKT--IKVRFDANIANGLPWDFKPMQREVTVRIGETTMIKYEAHNLFGEETYGRASFN 156 Query: 126 YAPQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKL-----PKDVTTITLSYTFF 180 AP ++ A+F KVECFCFT TL P + ++PVVF++DP+ KDV TITLSYTFF Sbjct: 157 VAPGRAGAYFNKVECFCFTDNTLKPGEDLELPVVFFVDPEFVNDPDLKDVKTITLSYTFF 216 Query: 181 EING-----KDKAAGSTVPTG 196 I+ KA GST G Sbjct: 217 PIDKPKPVVNAKAVGSTRNGG 237 >mlr7495 [O] COG3175 Cytochrome oxidase assembly factor Mlo Mesorhizobium loti Length = 206 Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 69/184 (37%), Positives = 96/184 (52%), Gaps = 11/184 (5%) Query: 17 NRVMLRKLVVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDATVEAPANSQVDKSRVVT 76 NR++ + M G YA +P+Y+ C+ TG T + VE +V R +T Sbjct: 11 NRIVAAVCLAFFTGMIGMAYAAVPLYKMFCQATGYGGTTQR---VEKQYAGRV-LDREIT 66 Query: 77 VEFDGNAQG-PWRFRPTVASLQVHPGEMTQVTYEVVNTQARNVDAQAIPSYAPQQSAAFF 135 V FD N G PW F+P S+ + GE Q Y+ N R V +A + P+ + +F Sbjct: 67 VRFDANIAGVPWEFQPVQRSMTMKIGETVQAHYQATNKFDRPVTGRATFNVQPELAGPYF 126 Query: 136 KKVECFCFTQQTLGPNQAKQMPVVFYIDPKL-----PKDVTTITLSYTFFEINGKDKAAG 190 KVECFCFT +L P + MPV+FY+DP + KDV TITLSYT F + K+K Sbjct: 127 NKVECFCFTDTSLKPGETVDMPVLFYVDPDIVNVPELKDVKTITLSYTMFPVE-KNKPVA 185 Query: 191 STVP 194 S+ P Sbjct: 186 SSEP 189 >AGc1406 [O] COG3175 Cytochrome oxidase assembly factor Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 205 Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 100/187 (53%), Gaps = 16/187 (8%) Query: 5 SDPDQEQPERGLNRVMLRKLVVVAVLMF----GFGYALIPVYRKICEVTGVNFLTPKDAT 60 ++ + E G RV R ++V+ ++ F G YA +P+Y C VTG N T + Sbjct: 2 ANMEAETARAGSQRVSNRSILVLCLVFFCAMIGMAYAAVPLYSLFCRVTGYNGTTQR--- 58 Query: 61 VEAPANSQVDKSRVVTVEFDGNAQG--PWRFRPTVASLQVHPGEMTQVTYEVVNTQARNV 118 VE ++ +DK+ + V FD N W FRP ++ GE +VT++ N Sbjct: 59 VEQYSDVILDKT--INVTFDANTSNGLNWDFRPVDKMVKPKIGETIKVTFKATNRSPVAT 116 Query: 119 DAQAIPSYAPQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLP-----KDVTTI 173 A+ + P ++ A+F KVECFCFT+ TL P + +MPVVF++DP + K V T+ Sbjct: 117 TGTAVFNVTPMEAGAYFNKVECFCFTETTLQPGETLEMPVVFFVDPDIATARETKSVHTL 176 Query: 174 TLSYTFF 180 TLSYTF+ Sbjct: 177 TLSYTFY 183