BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4024.p         (77 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0366 Non COG                                                       100   1e-21
yadH [V] COG0842 ABC-type multidrug transport system, permease c...    32   0.44 
ZyadH [V] COG0842 ABC-type multidrug transport system, permease ...    32   0.44 
ECs0132 [V] COG0842 ABC-type multidrug transport system, permeas...    32   0.44 
Ta1008 [GER] COG0697 Permeases of the drug/metabolite transporte...    30   1.1  

>RSc0366 Non COG
          Length = 70

 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 58/68 (85%)

Query: 3  DELKQAAQRKASFGLTMKAVFWSFFGVRKRKDYESDAAKLNPVHVIIAGILGAAIFVAVL 62
          DELK+A +R+ASF  TMKAVFWSFFGVR+  D++ D A+LNPVHVIIAGILGA +F+ VL
Sbjct: 2  DELKEATKRRASFAQTMKAVFWSFFGVRRGSDHDRDMAQLNPVHVIIAGILGAVLFIVVL 61

Query: 63 VIIVKLVV 70
          ++IV+ VV
Sbjct: 62 LLIVRAVV 69


>yadH [V] COG0842 ABC-type multidrug transport system, permease component
           Eco Escherichia coli K12
          Length = 256

 Score = 31.6 bits (70), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 25  SFFGVRKRKDYESDAAKLNPVHVIIAGILGAAI----FVAVLVIIVKL 68
           SFFG + +++ E       P HVIIAG +G  +    FV +LV  + L
Sbjct: 82  SFFGAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLFVGILVTAISL 129


>ZyadH [V] COG0842 ABC-type multidrug transport system, permease component
           EcZ Escherichia coli O157:H7 EDL933
          Length = 256

 Score = 31.6 bits (70), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 25  SFFGVRKRKDYESDAAKLNPVHVIIAGILGAAI----FVAVLVIIVKL 68
           SFFG + +++ E       P HVIIAG +G  +    FV +LV  + L
Sbjct: 82  SFFGAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLFVGILVTAISL 129


>ECs0132 [V] COG0842 ABC-type multidrug transport system, permease component
           Ecs Escherichia coli O157:H7
          Length = 256

 Score = 31.6 bits (70), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 25  SFFGVRKRKDYESDAAKLNPVHVIIAGILGAAI----FVAVLVIIVKL 68
           SFFG + +++ E       P HVIIAG +G  +    FV +LV  + L
Sbjct: 82  SFFGAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLFVGILVTAISL 129


>Ta1008 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Tac Thermoplasma acidophilum
          Length = 280

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 20  KAVFWSFFGVRKRKDYESDAAKLNPVHVIIAG 51
            AVFW+ F V  RK  E D   +N +   I G
Sbjct: 144 NAVFWALFTVYYRKLKEEDPVSINTMQFFIGG 175