BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4018.p (297 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0372 [O] COG0109 Polyprenyltransferase (cytochrome oxidase as... 398 e-111 XF1360 [O] COG0109 Polyprenyltransferase (cytochrome oxidase ass... 288 1e-77 PA0113 [O] COG0109 Polyprenyltransferase (cytochrome oxidase ass... 270 2e-72 mlr7493 [O] COG0109 Polyprenyltransferase (cytochrome oxidase as... 193 5e-49 mll1047 [O] COG0109 Polyprenyltransferase (cytochrome oxidase as... 191 2e-48 >RSc0372 [O] COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) Rso Ralstonia solanacearum Length = 310 Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust. Identities = 197/297 (66%), Positives = 240/297 (80%), Gaps = 4/297 (1%) Query: 2 TTLTAQP----NRIAQYWALTKPRVTQLAVFCAVIGMFLSTPELPDWHKVIFGTLGIWLL 57 T+ + QP + +QY ALTKPRVTQLAVFCAVIGMFL+TP + W +I G +GIWL Sbjct: 7 TSTSTQPSGWRHTASQYAALTKPRVTQLAVFCAVIGMFLATPGMVPWPVLIGGAVGIWLF 66 Query: 58 AGAAFAINCLVEREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLT 117 AGAAFAINCLVER+ID+ M RTA RP A GE+ Q L+FS VLGG GMW L+ N LT Sbjct: 67 AGAAFAINCLVERKIDAMMRRTAWRPSASGELGARQILLFSLVLGGAGMWTLHVFANDLT 126 Query: 118 MWLTFATFVGYAIIYTIILKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMII 177 MWLTFATF+GYAIIYT++LKPAT QNIVIGGL+GAMPPALGWAA+AN VP +AW+LV+II Sbjct: 127 MWLTFATFIGYAIIYTLLLKPATPQNIVIGGLSGAMPPALGWAAVANSVPAEAWILVLII 186 Query: 178 FIWTPPHFWALAMYRRDDYAKSGLPMLPITHGMEVTKLHILMYTIALLAVSMLPFAIGMS 237 F WTPPHFWALA+YRR DYAKSGLPMLPITHG + T LHIL+YT+ ++A ++LPF GMS Sbjct: 187 FTWTPPHFWALALYRRADYAKSGLPMLPITHGEKFTLLHILLYTLIMVAATILPFVHGMS 246 Query: 238 GLIYLGAAVLLGAIFFWYSWQIYRHYTDLIARKAFAYSIIYLSILFAVLLVDHYFLF 294 G +YL A++LG F ++W++YR+Y+D +A+K F YSI+YLS+LFA LL+DHYF F Sbjct: 247 GYLYLAVALVLGFGFLVHAWRMYRNYSDALAQKTFRYSIVYLSLLFAALLIDHYFKF 303 >XF1360 [O] COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) Xfa Xylella fastidiosa 9a5c Length = 303 Score = 288 bits (737), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 155/295 (52%), Positives = 204/295 (69%), Gaps = 7/295 (2%) Query: 10 RIAQYWALTKPRVTQLAVFCAVIGMFLSTPELPDWHKV---IFGTLGIWLLAGAAFAINC 66 R+ YW LTKP+V L VF A++GMFL+ P +P ++ G LGIWL A AA AIN Sbjct: 6 RLRDYWDLTKPKVVALIVFTALVGMFLAIPGIPSVVQIQSGALGFLGIWLAAAAAAAINQ 65 Query: 67 LVEREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWLTFATFV 126 L++ +ID++MART+ RP+ G++ Q LVF+GVL L M +L VN +T LTF + + Sbjct: 66 LLDAKIDAQMARTSWRPLVVGKVRPVQVLVFAGVLITLSMTILTLGVNLITAVLTFTSLI 125 Query: 127 GYAIIYTIILKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWV----LVMIIFIWTP 182 GYA+IYT+ LK TSQNIVIGGLAGAMPP LGWAA+ W+ LV IIF+WTP Sbjct: 126 GYAVIYTVYLKRMTSQNIVIGGLAGAMPPMLGWAAVTGLSTAADWINASLLVAIIFVWTP 185 Query: 183 PHFWALAMYRRDDYAKSGLPMLPITHGMEVTKLHILMYTIALLAVSMLPFAIGMSGLIYL 242 PHFWALA++RR DYAK+ +PMLP+THG++ T IL+YT+ L V++LP A GMSG+ YL Sbjct: 186 PHFWALAIFRRADYAKASIPMLPVTHGVQHTSRQILLYTVILSVVTLLPVATGMSGVFYL 245 Query: 243 GAAVLLGAIFFWYSWQIYRHYTDLIARKAFAYSIIYLSILFAVLLVDHYFLFRSF 297 GAA++L A+F WY+W++ +L A K F YSI+YL LFA L+ DH+ F Sbjct: 246 GAALVLDAVFLWYAWRLLDPPDELFAMKTFGYSIVYLMALFAFLMFDHWLRLADF 300 >PA0113 [O] COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) Pae Pseudomonas aeruginosa Length = 304 Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 150/287 (52%), Positives = 193/287 (67%), Gaps = 4/287 (1%) Query: 13 QYWALTKPRVTQLAVFCAVIGMFLSTPELPD----WHKVIFGTLGIWLLAGAAFAINCLV 68 + LTKP+V L + ++IGM L+T D W +IFG LGI L AGAA A+N +V Sbjct: 15 DFLELTKPKVVVLMLITSLIGMLLATKAPLDGFVPWQVLIFGNLGIGLCAGAAAAVNHVV 74 Query: 69 EREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWLTFATFVGY 128 +R IDS MART +RP+A G ++ L F+ +L GM VL NPLT WLT A+ +GY Sbjct: 75 DRRIDSIMARTHKRPLAEGRVSPSMALGFALLLALAGMAVLLAFTNPLTAWLTLASLLGY 134 Query: 129 AIIYTIILKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMIIFIWTPPHFWAL 188 A +YT LK AT QNIVIGGLAGA PP LGW A+ + + +LV+IIF WTPPHFWAL Sbjct: 135 AALYTGFLKRATPQNIVIGGLAGAAPPLLGWVAITGHLSAEPLLLVLIIFAWTPPHFWAL 194 Query: 189 AMYRRDDYAKSGLPMLPITHGMEVTKLHILMYTIALLAVSMLPFAIGMSGLIYLGAAVLL 248 ++R+D+YAK+ +PMLP+THG TKLHIL+YT+ L AVS++PF I MSGL+YL A+ L Sbjct: 195 CIHRKDEYAKADIPMLPVTHGERYTKLHILLYTLVLFAVSLMPFVIHMSGLVYLLCALAL 254 Query: 249 GAIFFWYSWQIYRHYTDLIARKAFAYSIIYLSILFAVLLVDHYFLFR 295 GA F ++W +Y A K F YSI+YL +LF LLVDHY + Sbjct: 255 GARFLDWAWALYCDSRPHAAIKTFKYSIVYLFLLFMALLVDHYLPLK 301 >mlr7493 [O] COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) Mlo Mesorhizobium loti Length = 314 Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 117/282 (41%), Positives = 166/282 (58%), Gaps = 5/282 (1%) Query: 13 QYWALTKPRVTQLAVFCAVIGMFLSTPELPDWHKVIFGTLGIWLLAGAAFAINCLVEREI 72 ++AL KPRV L VF A +G+ ++ P + + L I + AGA+ A+N + +I Sbjct: 23 DFFALLKPRVMSLVVFTAFVGL-VAAPVTINPLLAVIAILSIAIGAGASGALNMWYDADI 81 Query: 73 DSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWLTFATFVGYAIIY 132 D+ M RTA RP+ G I + L F VL L + L LVN L+ L T YA++Y Sbjct: 82 DAVMTRTASRPVPSGRIQPHEALSFGLVLSVLSVMTLGVLVNWLSATLLAFTIFFYAVVY 141 Query: 133 TIILKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMIIFIWTPPHFWALAMYR 192 T+ LK T QNIVIGG AGA+PP +GWAA+ V +++ VL +IIF+WTPPHFWALA+++ Sbjct: 142 TMWLKRWTPQNIVIGGAAGAIPPVIGWAAVTGSVSLESIVLFLIIFLWTPPHFWALALFK 201 Query: 193 RDDYAKSGLPMLPITHGMEVTKLHILMYTIALLAVSMLPFAIGMSGLIYLGAAVLLGAIF 252 DY ++G+PM+P G T+ I Y + L V + P+ +G + Y AA+LLG F Sbjct: 202 SGDYERAGIPMMPNVAGHASTRRQIFAYALVLAPVGVAPWLLGYTTPFYGVAAMLLGLGF 261 Query: 253 FWYSWQIYRHYTDLIARKA----FAYSIIYLSILFAVLLVDH 290 WY+W++ D A K FAYS++YL +FA L D Sbjct: 262 VWYAWKVLGMADDDRAMKPAKALFAYSLLYLFAIFAAYLADS 303 >mll1047 [O] COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) Mlo Mesorhizobium loti Length = 311 Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 124/290 (42%), Positives = 174/290 (60%), Gaps = 3/290 (1%) Query: 2 TTLTAQPNRIAQYWALTKPRVTQLAVFCAVIGMFLSTPELPDWHKVIFGTLGIWLLAGAA 61 T++ A ++AL KPRV LAVF A +G+ ++ P + + I + AGAA Sbjct: 11 TSIRLSEATAADFFALLKPRVMALAVFTAFVGLMVA-PGAVNPVIAVIAIAAIAIGAGAA 69 Query: 62 FAINCLVEREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWLT 121 A+N + +ID+ M+RT++RP+ G +T G+ L F VL L + L LV L L Sbjct: 70 GALNMWYDADIDALMSRTSKRPVPSGRVTPGEALGFGLVLSALSVMTLGVLVGWLAASLL 129 Query: 122 FATFVGYAIIYTIILKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMIIFIWT 181 T Y +IYT+ LK +T QNIVIGG AGA+PP +GWAA V +++ VL +IIF+WT Sbjct: 130 AFTIFFYIVIYTMWLKRSTPQNIVIGGAAGALPPVIGWAAATGAVGVESLVLFLIIFLWT 189 Query: 182 PPHFWALAMYRRDDYAKSGLPMLPITHGMEVTKLHILMYTIALLAVSMLPFAIGMSGLIY 241 PPHFWALA+++ DYA +G+PM+P G T+ IL Y + L V +LP+A G + Y Sbjct: 190 PPHFWALALFKVGDYAAAGIPMMPNVAGPASTRRQILAYALLLAPVGVLPWAFGFTSGYY 249 Query: 242 LGAAVLLGAIFFWYSWQIY-RHYTDLIARKA-FAYSIIYLSILFAVLLVD 289 A+ LG F W+SW++ T+L KA FAYSI+YL +FA LL D Sbjct: 250 GIASAALGVGFIWHSWKVRAASETELKPAKALFAYSIVYLFAVFAALLAD 299