BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4017.p (196 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0373 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invo... 243 2e-64 NMA1767 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invo... 143 2e-34 NMB1578 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invo... 142 3e-34 AGc3756 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invo... 135 7e-32 aq_988 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invol... 132 4e-31 >RSc0373 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems Rso Ralstonia solanacearum Length = 200 Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 116/169 (68%), Positives = 138/169 (81%), Gaps = 2/169 (1%) Query: 29 FNNTDVTGL-DYAKDFALTDHNGQPRTLADFKGKVVVMFFGYTQCPDVCPTTMVEMSNVM 87 F N D+TG + F+LTDH G+ RTL DF+GKVVVMFFGYT CPDVCPTT+ E+ VM Sbjct: 31 FQNLDITGAKSFGAGFSLTDHTGKRRTLEDFRGKVVVMFFGYTHCPDVCPTTLAELRGVM 90 Query: 88 KELGPDADRVQVLFVTVDPERDTQQVLAQYVPAFDKRFLGLR-GDLQQTEKVAKEFKVFY 146 LG DADRVQVLFVTVDP+RDTQ +LA+YVPAFD RF+GLR + Q+ +KVAK+FKVFY Sbjct: 91 DGLGKDADRVQVLFVTVDPQRDTQDLLAKYVPAFDPRFIGLRPANDQELQKVAKDFKVFY 150 Query: 147 QKVPGKQPGSYTMDHTAGSYVFDPQGHIRLFVKHGQGPQTLAHDIKLLL 195 KVPG P +YTMDHTAGSY+FDP+G++RLF+KHGQGP + HDIKLLL Sbjct: 151 SKVPGSTPDNYTMDHTAGSYMFDPKGNLRLFIKHGQGPAPIVHDIKLLL 199 >NMA1767 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems NmA Neisseria meningitidis Z2491 Length = 217 Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 71/174 (40%), Positives = 110/174 (63%), Gaps = 4/174 (2%) Query: 24 KPELKFNNTDVTGLDYAKDFALTDHNGQPRTLADFKGKVVVMFFGYTQCPDVCPTTMVEM 83 KP+ + TD+ D DF LTD G+P L+D KGKVV++ FG+T CPDVCPT ++ Sbjct: 46 KPQTR--GTDMRKEDIGGDFTLTDGEGKPFNLSDLKGKVVILSFGFTHCPDVCPTELLTY 103 Query: 84 SNVMKELGPDADRVQVLFVTVDPERDTQQVLAQYVPAFDKRFLGLRGDLQQTEKVAK-EF 142 S+ +K+LG A V+V+FV++DPERDT +++ +Y F+ F+GL Q V K ++ Sbjct: 104 SDTLKQLGGQAKDVKVVFVSIDPERDTPEIIGKYAKQFNPDFIGLTATGDQNLPVIKQQY 163 Query: 143 KVFYQKVPGKQPG-SYTMDHTAGSYVFDPQGHIRLFVKHGQGPQTLAHDIKLLL 195 +V KV K +Y +DH++G+Y+ D G + +F +G P+T+A D++ LL Sbjct: 164 RVVSAKVNQKDDSENYLVDHSSGAYLIDKNGEVAIFSPYGSEPETIAADVRTLL 217 >NMB1578 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems Nme Neisseria meningitidis MC58 Length = 217 Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 71/174 (40%), Positives = 110/174 (63%), Gaps = 4/174 (2%) Query: 24 KPELKFNNTDVTGLDYAKDFALTDHNGQPRTLADFKGKVVVMFFGYTQCPDVCPTTMVEM 83 KP+ + TD+ D DF LTD G+P L+D KGKVV++ FG+T CPDVCPT ++ Sbjct: 46 KPQTR--GTDMRKEDIGGDFTLTDGEGKPFNLSDLKGKVVILSFGFTHCPDVCPTELLTY 103 Query: 84 SNVMKELGPDADRVQVLFVTVDPERDTQQVLAQYVPAFDKRFLGLRGDLQQTEKVAK-EF 142 S+ +K+LG A V+V+FV++DPERDT +++ +Y F+ F+GL Q V K ++ Sbjct: 104 SDTLKQLGGQAKDVKVVFVSIDPERDTPEIIGKYAKQFNPDFIGLTATGGQNLPVIKQQY 163 Query: 143 KVFYQKVPGKQPG-SYTMDHTAGSYVFDPQGHIRLFVKHGQGPQTLAHDIKLLL 195 +V KV K +Y +DH++G+Y+ D G + +F +G P+T+A D++ LL Sbjct: 164 RVVSAKVNQKDDSENYLVDHSSGAYLIDKNGEVAIFSPYGSEPETIAADVRTLL 217 >AGc3756 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 202 Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 65/160 (40%), Positives = 95/160 (59%), Gaps = 3/160 (1%) Query: 39 YAKDFALTDHNGQPRTLADFKGKVVVMFFGYTQCPDVCPTTMVEMSNVMKELGPDADRVQ 98 Y FALT NGQP T F+GK +FFG+T CP+VCPTT+ E++ M+++ P D++Q Sbjct: 38 YGVPFALTAQNGQPITEKAFQGKPTALFFGFTHCPEVCPTTLFELNGWMEKVDPAGDKLQ 97 Query: 99 VLFVTVDPERDTQQVLAQYVPAFDKRFLGLRGDLQQTEKVAKEFKVFYQKVP--GKQP-G 155 FV+VDPERDT +++ QYV KR G+ G + + K ++++ +KVP K P G Sbjct: 98 AYFVSVDPERDTPEIMQQYVSNVSKRITGITGPADKIAETLKGYRIYAKKVPVDEKDPNG 157 Query: 156 SYTMDHTAGSYVFDPQGHIRLFVKHGQGPQTLAHDIKLLL 195 YTMDHTA + D G + +G+ P ++ LL Sbjct: 158 DYTMDHTASVILLDANGRFAGTIAYGENPDVAEQKLQNLL 197 >aq_988 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems Aae Aquifex aeolicus Length = 197 Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 71/163 (43%), Positives = 104/163 (63%), Gaps = 7/163 (4%) Query: 40 AKDFAL-TDHNGQPR--TLADF--KGKVVVMFFGYTQCPDVCPTTMVEMSNVMKELGPDA 94 A +F L T+ NG+ + L D + +V++FFG+T CPDVCP M + N MK+L D Sbjct: 34 AYNFCLKTEENGKVKEVCLKDILKEKDIVLVFFGFTHCPDVCPAAMEVLKNTMKKLDEDE 93 Query: 95 -DRVQVLFVTVDPERDTQQVLAQYVPAFDKRFLGLRGDLQQTEKVAKEFKVFYQKVPGKQ 153 RVQV+F++VDPERDT ++++QY FD+ FLGL G ++ ++VAK +KVFY+KVP K Sbjct: 94 RKRVQVVFISVDPERDTPKLVSQYAKYFDESFLGLTGTPEEIKEVAKAYKVFYEKVPQKG 153 Query: 154 PGSYTMDHTAGSYVFDPQGHIRL-FVKHGQGPQTLAHDIKLLL 195 Y ++H+A Y+ G I+L + Q P +A D+K LL Sbjct: 154 SNDYLVNHSALIYLITKDGKIKLIYSASKQKPNLIAEDVKKLL 196