BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4006.p         (86 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0391 [C] COG1145 Ferredoxin Rso Ralstonia solanacearum             130   5e-31
PA0362 [C] COG1145 Ferredoxin Pae Pseudomonas aeruginosa              120   7e-28
NMA0150 [C] COG1145 Ferredoxin NmA Neisseria meningitidis Z2491       110   5e-25
YPO2927 [C] COG1145 Ferredoxin Ype Yersinia pestis                    110   1e-24
NMB0123 [C] COG1145 Ferredoxin Nme Neisseria meningitidis MC58        109   1e-24

>RSc0391 [C] COG1145 Ferredoxin Rso Ralstonia solanacearum
          Length = 82

 Score =  130 bits (328), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 69/81 (85%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDPGKCTECVGHFEEPQCQQVCPVACIP 60
          MALMITD+CINCDVCEPECPN AI MGP+IY IDPGKCTECVGHF+ PQCQQVCPV CIP
Sbjct: 1  MALMITDECINCDVCEPECPNGAISMGPEIYVIDPGKCTECVGHFDAPQCQQVCPVECIP 60

Query: 61 FNPAWRESREQLMDKYERLQA 81
           +PA  E+ EQLM KY +L A
Sbjct: 61 NDPAHAETPEQLMQKYLKLTA 81


>PA0362 [C] COG1145 Ferredoxin Pae Pseudomonas aeruginosa
          Length = 83

 Score =  120 bits (301), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 56/83 (67%), Positives = 67/83 (80%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDPGKCTECVGHFEEPQCQQVCPVACIP 60
          M+L ITDDCINCDVCEPECPN AI  G +IY IDP  CTECVGH++EPQCQQVCPV CIP
Sbjct: 1  MSLKITDDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDCIP 60

Query: 61 FNPAWRESREQLMDKYERLQAEA 83
           + A  ES++QLM+KY ++  +A
Sbjct: 61 LDDANVESKDQLMEKYRKITGKA 83


>NMA0150 [C] COG1145 Ferredoxin NmA Neisseria meningitidis Z2491
          Length = 83

 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 65/79 (82%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDPGKCTECVGHFEEPQCQQVCPVACIP 60
          M+L ITD+CINCDVCEPECPN+AI  G +IYEI+P  CT+CVGH++EPQCQQVCPV CI 
Sbjct: 1  MSLFITDECINCDVCEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDCIL 60

Query: 61 FNPAWRESREQLMDKYERL 79
           +  + E+ ++LM KYE++
Sbjct: 61 IDEEYPETHDELMAKYEKI 79


>YPO2927 [C] COG1145 Ferredoxin Ype Yersinia pestis
          Length = 86

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 63/81 (77%), Gaps = 1/81 (1%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDPGKCTECVGHFEEPQCQQVCPV-ACI 59
          MAL+IT  CINCD+CEPECPNEAI MG +IY+IDP +CTECVGH+E P CQ VCP+   I
Sbjct: 1  MALLITKRCINCDMCEPECPNEAISMGAEIYQIDPMRCTECVGHYETPTCQLVCPIDNTI 60

Query: 60 PFNPAWRESREQLMDKYERLQ 80
            +PAW E+ EQL DK+ +L 
Sbjct: 61 SADPAWVETNEQLWDKFVQLH 81


>NMB0123 [C] COG1145 Ferredoxin Nme Neisseria meningitidis MC58
          Length = 83

 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 64/79 (81%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDPGKCTECVGHFEEPQCQQVCPVACIP 60
          M+L ITD+CINCDVCEPECPN+AI  G +IYEI+P  CT+CVGH++EPQCQQVCPV CI 
Sbjct: 1  MSLFITDECINCDVCEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDCIL 60

Query: 61 FNPAWRESREQLMDKYERL 79
           +    E+ ++LM KYE++
Sbjct: 61 IDEEHPETHDELMAKYEKI 79