BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3993.p         (94 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb21639 Non COG                                                      158   3e-39
RSp0605 [Q] COG3460 Uncharacterized enzyme of phenylacetate meta...   124   5e-29
ynbF [Q] COG3460 Uncharacterized enzyme of phenylacetate metabol...   124   6e-29
DR2385 [Q] COG3460 Uncharacterized enzyme of phenylacetate metab...    59   2e-09
BH0197 [Q] COG3460 Uncharacterized enzyme of phenylacetate metab...    37   0.010

>SMb21639 Non COG
          Length = 94

 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 71/94 (75%), Positives = 82/94 (87%)

Query: 1  MSKEWPLWEVFIRSQHGLAHKHVGSLHAPDGEMAINNARDVYTRRNEGVGIWVVRAADIV 60
          MS EWPLWEVFIR QHGL H+HVGSLHAPD EMAINNARDVYTRRNEGV IWVVR++DI 
Sbjct: 1  MSSEWPLWEVFIRGQHGLNHRHVGSLHAPDAEMAINNARDVYTRRNEGVSIWVVRSSDIA 60

Query: 61 SSSPGDKAPLFEPSNSKVYRHPTFFPMPAELKNL 94
          +S+P +K PLFEP+N+KVYRHPTFF +P E  ++
Sbjct: 61 ASAPSEKGPLFEPANAKVYRHPTFFDIPDEAGHM 94


>RSp0605 [Q] COG3460 Uncharacterized enzyme of phenylacetate metabolism
          Rso Ralstonia solanacearum
          Length = 95

 Score =  124 bits (311), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 67/91 (73%)

Query: 4  EWPLWEVFIRSQHGLAHKHVGSLHAPDGEMAINNARDVYTRRNEGVGIWVVRAADIVSSS 63
          EWPLWEVFIRS+ GL HKH GSLHA D   A+  ARDVYTRR EG+ IWVV +A I +S 
Sbjct: 5  EWPLWEVFIRSRQGLEHKHCGSLHAADARQALQMARDVYTRRQEGISIWVVPSAAITASE 64

Query: 64 PGDKAPLFEPSNSKVYRHPTFFPMPAELKNL 94
          P DK  LF+P   K+YRHPTF+ +P E+ ++
Sbjct: 65 PDDKPMLFDPMADKIYRHPTFYRLPDEINHM 95


>ynbF [Q] COG3460 Uncharacterized enzyme of phenylacetate metabolism
          Eco Escherichia coli K12
          Length = 95

 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 72/90 (80%)

Query: 5  WPLWEVFIRSQHGLAHKHVGSLHAPDGEMAINNARDVYTRRNEGVGIWVVRAADIVSSSP 64
          WPL+EVF+R + GL+H+HVGSLHA D  MA+ NARD YTRR+EG  IWVV+A++IV+S P
Sbjct: 6  WPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIVASQP 65

Query: 65 GDKAPLFEPSNSKVYRHPTFFPMPAELKNL 94
           ++   F+P+ SKVYRHPTF+ +P  ++++
Sbjct: 66 EERGEFFDPAESKVYRHPTFYTIPDGIEHM 95


>DR2385 [Q] COG3460 Uncharacterized enzyme of phenylacetate metabolism
          Dra Deinococcus radiodurans
          Length = 230

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 40/61 (65%)

Query: 4  EWPLWEVFIRSQHGLAHKHVGSLHAPDGEMAINNARDVYTRRNEGVGIWVVRAADIVSSS 63
          +WP WEVF +      ++ VG++HA D E A+  AR+V+ RR   V +W VR ADI++++
Sbjct: 32 QWPRWEVFKQDTDKRPYQAVGTVHAGDPEHALLTARNVFVRRPAAVSLWAVREADILTAT 91

Query: 64 P 64
          P
Sbjct: 92 P 92


>BH0197 [Q] COG3460 Uncharacterized enzyme of phenylacetate metabolism
          Bha Bacillus halodurans
          Length = 119

 Score = 37.0 bits (84), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%)

Query: 8  WEVFIRSQHGLAHKHVGSLHAPDGEMAINNARDVYTRRNEGVGIWVVRAADIVSSSPGDK 67
          +EVF R       +   SL AP+ EMA+  A++ + RR     IWVV+ + I S +  ++
Sbjct: 13 YEVFSRKSSSAPFQLQFSLLAPNEEMALMMAQENFMRREPVDDIWVVKRSHIRSMTSSER 72

Query: 68 APLFEPSNSKVYR 80
              +  ++K YR
Sbjct: 73 EQWTKRLDNKHYR 85