BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3986.p (596 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0706_2 [E] COG0411 ABC-type branched-chain amino acid transpo... 364 e-100 RSp0706_1 [E] COG4177 ABC-type branched-chain amino acid transpo... 347 6e-95 AGc2606_2 [E] COG0411 ABC-type branched-chain amino acid transpo... 306 1e-82 AGc2606_1 [E] COG4177 ABC-type branched-chain amino acid transpo... 295 2e-79 DRA0261_2 [E] COG0411 ABC-type branched-chain amino acid transpo... 292 2e-78 >RSp0706_2 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 257 Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust. Identities = 188/256 (73%), Positives = 220/256 (85%) Query: 341 GEVILDVQAARKQFGGLVAVNDVSFSVKAGEIVGLIGPNGAGKSTTFNLVTGVLSITSGK 400 GE++LDV+A RK+FGGLVAVNDVSF V+AGEI+GLIGPNGAGKSTTFNLVTGVL +T G+ Sbjct: 2 GELVLDVRAVRKEFGGLVAVNDVSFQVRAGEIIGLIGPNGAGKSTTFNLVTGVLPVTRGE 61 Query: 401 LDYRGQSLAGLSSRDIASRGIARTFQHVRLVPGMSVLENAAMGAFRRGEFAPQRGILASL 460 + YRG+ ++G SR+I RGI RTFQHV+L+PGM+VLEN A+GA RG+FA Q G+LAS+ Sbjct: 62 VLYRGERISGKPSREIVRRGIGRTFQHVQLLPGMTVLENVALGAHLRGDFAAQGGVLASV 121 Query: 461 VRGNRREEARILSEARRQLERVGLGELMHRPAGSLALGQQRILEIARALCCDPALLLLDE 520 R NR EE ++L EAR QLERVGL + M++ AGSLALGQQRILEIARALCCDPALLLLDE Sbjct: 122 ARMNRHEEQKLLFEARCQLERVGLADCMYQEAGSLALGQQRILEIARALCCDPALLLLDE 181 Query: 521 PAAGLRLKEKQALAALLDKLRGEGMAVLLVEHDMDFVMQLTDHIVVMEFGSKIAEGTPAQ 580 PAAGLR KEKQALAALL +LR EGM+VLLVEHDMDFVM LTD +VVMEFG++IAEG P Sbjct: 182 PAAGLRYKEKQALAALLARLRAEGMSVLLVEHDMDFVMNLTDRLVVMEFGTRIAEGVPQD 241 Query: 581 IQVHPAVLEAYLGGAQ 596 +Q PAVLEAYLGG + Sbjct: 242 VQRDPAVLEAYLGGVE 257 >RSp0706_1 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Rso Ralstonia solanacearum Length = 351 Score = 347 bits (889), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 209/324 (64%), Positives = 260/324 (80%), Gaps = 1/324 (0%) Query: 16 FAIVLAL-PLLGLPPFWVTLLSYVGLYAIVALGLVLLTGVAGLISFGQAAFVGIGAYTTA 74 F I LAL P+L P FW+TLL+Y+GLY++VALGLVLLTGV GL SFGQAAFVG+GAY+TA Sbjct: 27 FVIGLALLPVLPTPEFWITLLNYIGLYSLVALGLVLLTGVGGLTSFGQAAFVGLGAYSTA 86 Query: 75 YLTTQFGLSPWIGLLAGIALTALSAFLIGALTMRISGHYLPLSTIAWGLSLYYLFGNLEM 134 YL+TQ+GLSPWIGLLAG+A+T SA++IG +TMR+SGHYLPL+TIAWGLSL++LFGNL Sbjct: 87 YLSTQYGLSPWIGLLAGLAITVASAYVIGLITMRMSGHYLPLATIAWGLSLFFLFGNLAF 146 Query: 135 LGKHDGINGIPAIAIGSVEFGNGPSMYLLIWVVVILALVSVLNFLDSRAGRAVRALRFGT 194 LGK+DG+NGIP + + G M+ LIW VV++A+++V N L+SR GRA+RAL+ G Sbjct: 147 LGKYDGLNGIPVLNLLGKPLQTGREMFYLIWAVVVVAVLAVQNLLNSRPGRAIRALKGGG 206 Query: 195 VMPEAMGVDTARLKIVIFVYAAVLAGISGWLYAHLQQAVNPTPFGLKYGIDYLLMVVVGG 254 M EAMGV+TA +K+VIFV AA+LA ISG+LYAHLQ+AVNPTPFGL YGI+YL M VVGG Sbjct: 207 TMAEAMGVNTAWMKVVIFVAAAILACISGFLYAHLQRAVNPTPFGLNYGIEYLFMAVVGG 266 Query: 255 AGYVWGALLGAGLLAVLSNFLQEWLPGVLGTGGNFEAIVFGIALVIFLQFANEGLWPRLQ 314 G+VWGA+LGAGLL +L + LQ LP +LG+ GNFE IVFG+ LV+ LQ+A +G+WP L+ Sbjct: 267 VGHVWGAVLGAGLLTILKDSLQNLLPKLLGSTGNFEIIVFGVLLVLLLQYARDGVWPFLR 326 Query: 315 ARFGRRLAPRLPADAAALAQLPKP 338 F A R PADA AL Q KP Sbjct: 327 RLFPSAPAARAPADAPALRQREKP 350 >AGc2606_2 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 272 Score = 306 bits (783), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 170/268 (63%), Positives = 203/268 (75%), Gaps = 4/268 (1%) Query: 328 DAAALAQLPKPTRGEVILDVQAARKQFGGLVAVNDVSFSVKAGEIVGLIGPNGAGKSTTF 387 D AL + P P G ++ V RK FGGL AVNDVSF +KAG+I+GLIGPNGAGKSTTF Sbjct: 8 DGEALDKRPMPQTGSPLVRVDRVRKAFGGLTAVNDVSFDIKAGQIIGLIGPNGAGKSTTF 67 Query: 388 NLVTGVLSITSGKLDYRGQSLAGLSSRDIASRGIARTFQHVRLVPGMSVLENAAMGAFRR 447 NL+TG+L+++ G++ Y+GQ L+GL+ R IA RGIARTFQH +++P MSVLEN A+GA R Sbjct: 68 NLITGILNLSGGEVTYQGQRLSGLNPRLIARRGIARTFQHAKVLPTMSVLENVALGAHLR 127 Query: 448 GEFAPQRGILASLVRGNRREEARILSEARRQLERVGLGELMHRPAGSLALGQQRILEIAR 507 G G+ S R RR+E +L+EA QL+RVGLG RPAG LALGQ RILEIAR Sbjct: 128 GNA----GMFRSFFRLERRQEQALLAEAADQLDRVGLGAHRDRPAGDLALGQIRILEIAR 183 Query: 508 ALCCDPALLLLDEPAAGLRLKEKQALAALLDKLRGEGMAVLLVEHDMDFVMQLTDHIVVM 567 ALC +P LLLLDEPAAGLR EKQ LA LL KLR EG++VLLVEHDM FVM L DHIVV+ Sbjct: 184 ALCLNPTLLLLDEPAAGLRHGEKQELADLLKKLRAEGVSVLLVEHDMGFVMGLVDHIVVL 243 Query: 568 EFGSKIAEGTPAQIQVHPAVLEAYLGGA 595 +FG+ IAEG PA I+ HPAV+ AYLGGA Sbjct: 244 DFGTLIAEGKPADIRQHPAVIAAYLGGA 271 >AGc2606_1 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 323 Score = 295 bits (755), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 164/297 (55%), Positives = 220/297 (74%) Query: 18 IVLALPLLGLPPFWVTLLSYVGLYAIVALGLVLLTGVAGLISFGQAAFVGIGAYTTAYLT 77 +V PLL +PPFWVTL + +GL ++VA+GLVLLTGV G+ SFGQAAF G GAYTTA LT Sbjct: 21 LVAIFPLLPVPPFWVTLANNIGLASLVAIGLVLLTGVGGMTSFGQAAFCGFGAYTTAVLT 80 Query: 78 TQFGLSPWIGLLAGIALTALSAFLIGALTMRISGHYLPLSTIAWGLSLYYLFGNLEMLGK 137 + +G SPW+ L + + A+ A +G +T+R+SGHYLPL TIAWGL++YYLFG +E+LG+ Sbjct: 81 SAYGFSPWLTLPLSLLVGAVVALPLGLMTVRLSGHYLPLGTIAWGLAIYYLFGRIELLGR 140 Query: 138 HDGINGIPAIAIGSVEFGNGPSMYLLIWVVVILALVSVLNFLDSRAGRAVRALRFGTVMP 197 +DGI+GIP +++G + S+Y +IW+ VI + N LDSR GR +RALR G+ Sbjct: 141 YDGISGIPPLSLGGEALMSSSSIYYIIWIFVIAVAIGAQNLLDSRVGRGIRALRGGSQAA 200 Query: 198 EAMGVDTARLKIVIFVYAAVLAGISGWLYAHLQQAVNPTPFGLKYGIDYLLMVVVGGAGY 257 EA GV+ R K+ +FV+AAV+A +SGWLYAH+Q+++NPTPFGL GI Y+LM VVGG+G Sbjct: 201 EAFGVNIERAKLTVFVFAAVVAALSGWLYAHMQRSINPTPFGLDMGITYMLMAVVGGSGR 260 Query: 258 VWGALLGAGLLAVLSNFLQEWLPGVLGTGGNFEAIVFGIALVIFLQFANEGLWPRLQ 314 V GA+ GA ++ VL LQ LPG+LGT NFE IVFG+ LV+ LQ + +GLWP L+ Sbjct: 261 VVGAIFGASVVLVLKEVLQRVLPGLLGTSVNFEMIVFGVLLVLILQLSRDGLWPLLE 317 >DRA0261_2 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 271 Score = 292 bits (747), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 160/271 (59%), Positives = 188/271 (69%), Gaps = 4/271 (1%) Query: 323 PRLPADAAALAQLPKPTRGEVILDVQAARKQFGGLVAVNDVSFSVKAGEIVGLIGPNGAG 382 PRL A A P P G IL V+ A KQFGGL AVNDVSF V AGEIVGLIGPNGAG Sbjct: 2 PRLLARAVTFPHRPTPAPGSPILKVRNAVKQFGGLKAVNDVSFDVNAGEIVGLIGPNGAG 61 Query: 383 KSTTFNLVTGVLSITSGKLDYRGQSLAGLSSRDIASRGIARTFQHVRLVPGMSVLENAAM 442 KST FNLVTGV TSG ++ G L +R I G+ARTFQHV+L P +S+LEN M Sbjct: 62 KSTMFNLVTGVNPATSGTVEVLGHDAGRLPARAIHRLGVARTFQHVKLFPELSLLENTMM 121 Query: 443 GAFRRGEFAPQRGILASLVRGNRREEARILSEARRQLERVGLGELMHRPAGSLALGQQRI 502 G + RG Q G+L S++ R EEA + A QLERVGL E + AG+LALGQQR+ Sbjct: 122 GGYARG----QAGLLRSMLHLERGEEAALQGLALTQLERVGLSEQAYEQAGNLALGQQRL 177 Query: 503 LEIARALCCDPALLLLDEPAAGLRLKEKQALAALLDKLRGEGMAVLLVEHDMDFVMQLTD 562 LEIARAL DP+ LLLDEPAAGLR EKQ LA LL KLR EG+ +L+VEHDMD VM L D Sbjct: 178 LEIARALVADPSFLLLDEPAAGLRFGEKQELATLLRKLRDEGVTILIVEHDMDLVMNLVD 237 Query: 563 HIVVMEFGSKIAEGTPAQIQVHPAVLEAYLG 593 +VVM G ++A+G+P Q++ +PAV EAYLG Sbjct: 238 RLVVMNSGQELAQGSPQQVRSNPAVREAYLG 268