BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3980.p (326 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0496 [E] COG1984 Allophanate hydrolase subunit 2 Pae Pseudomon... 471 e-132 BH1818 [E] COG1984 Allophanate hydrolase subunit 2 Bha Bacillus ... 213 4e-55 FN0436 [E] COG1984 Allophanate hydrolase subunit 2 Fnu Fusobacte... 202 1e-51 ybgK [E] COG1984 Allophanate hydrolase subunit 2 Eco Escherichia... 183 5e-46 ECs0737 [E] COG1984 Allophanate hydrolase subunit 2 Ecs Escheric... 182 1e-45 >PA0496 [E] COG1984 Allophanate hydrolase subunit 2 Pae Pseudomonas aeruginosa Length = 325 Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust. Identities = 233/319 (73%), Positives = 270/319 (84%) Query: 1 MTIKVKQPGLATSVQDGGREGYYHLGIPPSGALDQYALRAANLLVGNAATSSALECTLLG 60 M+IKV +PGLATSVQD GREG+YHLGIPPSGALDQYALRAANLLVGNA T++ LEC LLG Sbjct: 1 MSIKVLKPGLATSVQDAGREGHYHLGIPPSGALDQYALRAANLLVGNAPTAAVLECALLG 60 Query: 61 PQLQFQRDALVAVTGARMQPRVDGLEQPLDTAFKVRSGQVLSFDYPKSGARSYIAIGGGI 120 PQL+FQRDALVAV GARM PR++G E PLDT+F+VR+GQVL FD+ ++GAR Y+AI GGI Sbjct: 61 PQLEFQRDALVAVCGARMTPRLEGAEMPLDTSFRVRAGQVLGFDFIRAGARGYLAIDGGI 120 Query: 121 DVPVVLESRSTYGLGALGGWQGRKLAKDDEIPLGRPSAQAMEGRALPLSLVPVYARQTTL 180 VP VL SRSTYGLGA+GG QGR+LA+ D +PLG S A+EG ALP SL + +L Sbjct: 121 AVPEVLGSRSTYGLGAIGGLQGRRLAEGDLLPLGPASPSAVEGLALPRSLQVEVGGEVSL 180 Query: 181 RVVPGLYIHRLTDDAVERFFADTWTVGSEADRIGYRFKGGQPMQFRPREQPFGAGSDPSN 240 RVVPGLY+HRLT DAVERFFA+TWTVGSEADR GYRFKGG ++F PREQPFGAGSDPSN Sbjct: 181 RVVPGLYVHRLTPDAVERFFAETWTVGSEADRTGYRFKGGTALRFEPREQPFGAGSDPSN 240 Query: 241 IVDACYPIGSIQIPGGLEPIVLLRDAVSGGGYATIGTVISADLDLIGQLQPNHQAQFERV 300 IVDACYPIGSIQ+PGGLEPIVL RDAVSGGGYAT+GTVIS DL+ + Q+QPN + +F V Sbjct: 241 IVDACYPIGSIQVPGGLEPIVLHRDAVSGGGYATLGTVISPDLNRLAQMQPNQKGRFVAV 300 Query: 301 TLEQALEARRHYQQRLQRL 319 +LE+ LEARR Y ++QRL Sbjct: 301 SLEEGLEARRRYNWQVQRL 319 >BH1818 [E] COG1984 Allophanate hydrolase subunit 2 Bha Bacillus halodurans Length = 331 Score = 213 bits (543), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 125/336 (37%), Positives = 185/336 (55%), Gaps = 30/336 (8%) Query: 3 IKVKQPGLATSVQDGGREGYYHLGIPPSGALDQYALRAANLLVGNAATSSALECTLLGPQ 62 + + +PGL T++QD GR GY G+ SG +D+YA R ANLLVGN ++ LE T +GP Sbjct: 1 MTIFRPGLLTTIQDLGRTGYLKYGVIVSGPMDEYAHRMANLLVGNDEKAALLEMTFIGPT 60 Query: 63 LQFQRDALVAVTGARMQPRVDGLEQPLDTAFKVRSGQVLSFDYPKSGARSYIAIGGGIDV 122 +QF D L+A+TG + P +DG P+ V+ G VLSF K+G RSY+AIGGGIDV Sbjct: 61 IQFTSDQLIAMTGGDLSPTIDGHSVPMYRPVFVKKGAVLSFGRCKTGCRSYLAIGGGIDV 120 Query: 123 PVVLESRSTYGLGALGGWQGRKLAKDDEIPLGRPSAQAME-GRALPLSLVPVYAR----- 176 P V+ SRSTY +GG+QGR L + DE+ G P Q + +V +A Sbjct: 121 PKVMNSRSTYLRAKIGGFQGRALVEGDELICGAPPEQTERLVKTCQKGIVHSFATTKWSV 180 Query: 177 ----------QTTLRVVPGLYIHRLTDDAVERFFADTWTVGSEADRIGYRFKGGQPMQFR 226 + +RV G + + ++ + +FF++T+ V S++DR+GYR KG P R Sbjct: 181 VSSQRSRDGAEKVVRVTVGSHYEQFSEASQHKFFSETFQVTSKSDRMGYRLKG--PTLER 238 Query: 227 PREQPFGAGSDPSNIVDACYPIGSIQIPGGLEPIVLLRDAVSGGGYATIGTVISADLDLI 286 EQ ++ +G+IQ+P PI+L+ D + GGY I VI+ DL +I Sbjct: 239 LEEQ---------ELISEPISVGTIQVPADGNPIILMADRQTTGGYPRIAHVIAVDLPII 289 Query: 287 GQLQPNHQAQFERVTLEQALEARRHYQQRLQRLGSL 322 Q +P +F++ +L+ EA R Y +R + L Sbjct: 290 AQAKPGAAIRFQQASLK---EAERLYIRRAREFNEL 322 >FN0436 [E] COG1984 Allophanate hydrolase subunit 2 Fnu Fusobacterium nucleatum Length = 336 Score = 202 bits (513), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 108/318 (33%), Positives = 168/318 (52%), Gaps = 12/318 (3%) Query: 2 TIKVKQPGLATSVQDGGREGYYHLGIPPSGALDQYALRAANLLVGNAATSSALECTLLGP 61 IKV +PGL T+VQD GR GY GIP SG +D++A AN LV + ++ LE LGP Sbjct: 3 NIKVHKPGLCTTVQDIGRIGYQQFGIPVSGVMDEFAFTVANYLVESDKNNTVLEIPFLGP 62 Query: 62 QLQFQRDALVAVTGARMQPRVDGLEQPLDTAFKVRSGQVLSFDYPKSGARSYIAIGGGID 121 L+F D +A+TGA +QP+++ E + + ++ G LSF K+G RSY+A ID Sbjct: 63 TLEFDFDVTIAITGADIQPKINNQEVKMWQSINIKKGDTLSFGGLKTGIRSYLAFSAEID 122 Query: 122 VPVVLESRSTYGLGALGGWQGRKLAKDDEIPLGRPSAQAMEGRALPLSLVPVYARQTTLR 181 VP+++ S+ST LGG+ GR+L D I + + L +P Y +R Sbjct: 123 VPIIMGSKSTLLKSKLGGFDGRQLKIGDIINFKNVKVLS-KKNILDKKYIPEYKHNQNIR 181 Query: 182 VVPGLYIHRLTDDAVERFFADTWTVGSEADRIGYRFKGGQPMQFRPREQPFGAGSDPSNI 241 +V G + +++++ + + V +ADR+G R G D ++I Sbjct: 182 IVLGPQDNYFDENSIKTLLENKYQVTKDADRMGMRLLG-----------EVIKHKDKADI 230 Query: 242 VDACYPIGSIQIPGGLEPIVLLRDAVSGGGYATIGTVISADLDLIGQLQPNHQAQFERVT 301 + GSIQ+PG +PI+LL D + GGY I TVI ADL + Q+ PN +F + Sbjct: 231 ISDAAVFGSIQVPGNGQPIILLADRQTTGGYTKIATVIKADLPKLAQMVPNDTIEFSLIN 290 Query: 302 LEQALEARRHYQQRLQRL 319 +E+A + + + + L + Sbjct: 291 IEEAQKEYKEFYKILDEI 308 >ybgK [E] COG1984 Allophanate hydrolase subunit 2 Eco Escherichia coli K12 Length = 310 Score = 183 bits (464), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 113/323 (34%), Positives = 173/323 (53%), Gaps = 16/323 (4%) Query: 3 IKVKQPGLATSVQDGGREGYYHLGIPPSGALDQYALRAANLLVGNAATSSALECTLLGPQ 62 +K+ + G+ T+VQDGGR G+ GI GALD ALR ANLLVGN A + ALE TL Sbjct: 2 LKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQLT 61 Query: 63 LQFQRDALVAVTGARMQPRVDGLEQPLDTAFKVRSGQVLSFDYPKSGARSYIAIGGGIDV 122 ++F+ D A+TGA + R+D +++GQ L+ P+ G RSY+A+ GGIDV Sbjct: 62 VEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGIDV 121 Query: 123 PVVLESRSTYGLGALGGWQGRKLAKDDEIPLGRPSAQAMEGRALPLSLVPVYARQTTLRV 182 P V+ S ST +GG +GR L D +P+G+ +ME + + L +R Sbjct: 122 PPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKSKRDSMEAQGVKQLLWG-----NRIRA 176 Query: 183 VPGLYIHRLTDDAVERFFADTWTVGSEADRIGYRFKGGQPMQFRPREQPFGAGSDPSNIV 242 +PG H + + F+ W + S+++R+GYR +G Q +D + Sbjct: 177 LPGPEYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQG----------QILKRTTDRELLS 226 Query: 243 DACYPIGSIQIPGGLEPIVLLRDAVSGGGYATIGTVISADLDLIGQLQPNHQAQFERVTL 302 P G +Q+P +PIVL+ DA + GGY I +I AD+ + Q+ F + +L Sbjct: 227 HGLLP-GVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSL 285 Query: 303 EQALEARRHYQQRLQRLGSLLHH 325 E+AL+AR+ Q+ ++L LH+ Sbjct: 286 EEALKARQDQQRYFEQLAWRLHN 308 >ECs0737 [E] COG1984 Allophanate hydrolase subunit 2 Ecs Escherichia coli O157:H7 Length = 310 Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 113/323 (34%), Positives = 172/323 (53%), Gaps = 16/323 (4%) Query: 3 IKVKQPGLATSVQDGGREGYYHLGIPPSGALDQYALRAANLLVGNAATSSALECTLLGPQ 62 +K+ + G+ T+VQDGGR G+ GI GALD ALR ANLLVGN A + ALE TL Sbjct: 2 LKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQLT 61 Query: 63 LQFQRDALVAVTGARMQPRVDGLEQPLDTAFKVRSGQVLSFDYPKSGARSYIAIGGGIDV 122 ++F+ D A+TGA + R+D +++GQ L+ P+ G RSY+A+ GGIDV Sbjct: 62 VEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGIDV 121 Query: 123 PVVLESRSTYGLGALGGWQGRKLAKDDEIPLGRPSAQAMEGRALPLSLVPVYARQTTLRV 182 P V+ S ST +GG +GR L D +P+G+ ME + + L +R Sbjct: 122 PPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKAKRDFMEAQGVKQLLWG-----NRIRA 176 Query: 183 VPGLYIHRLTDDAVERFFADTWTVGSEADRIGYRFKGGQPMQFRPREQPFGAGSDPSNIV 242 +PG H + + F+ W + S+++R+GYR +G Q +D + Sbjct: 177 LPGPEYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQG----------QILKRTTDRELLS 226 Query: 243 DACYPIGSIQIPGGLEPIVLLRDAVSGGGYATIGTVISADLDLIGQLQPNHQAQFERVTL 302 P G +Q+P +PIVL+ DA + GGY I +I AD+ + Q+ F + +L Sbjct: 227 HGLLP-GVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSL 285 Query: 303 EQALEARRHYQQRLQRLGSLLHH 325 E+AL+AR+ Q+ ++L LH+ Sbjct: 286 EEALKARQDQQRYFEQLAWRLHN 308