BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3969.p (249 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2959 [M] COG2853 Surface lipoprotein Rso Ralstonia solanacearum 218 8e-57 PA2800 [M] COG2853 Surface lipoprotein Pae Pseudomonas aeruginosa 192 7e-49 NMB1961 [M] COG2853 Surface lipoprotein Nme Neisseria meningitid... 157 2e-38 NMA0490 [M] COG2853 Surface lipoprotein NmA Neisseria meningitid... 157 2e-38 XF0416 [M] COG2853 Surface lipoprotein Xfa Xylella fastidiosa 9a5c 156 4e-38 >RSc2959 [M] COG2853 Surface lipoprotein Rso Ralstonia solanacearum Length = 269 Score = 218 bits (556), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 117/230 (50%), Positives = 146/230 (63%), Gaps = 1/230 (0%) Query: 4 MNKKAINTAYAGRLGAFALAAAALSGCASTSN-NPNDPLEGFNRTMFSFNDTVDKVALKP 62 M N G A +A L+GCA+ N NP DP+E FNR +F ND +DK LKP Sbjct: 1 MRTTTSNRTLRGLALGMAASAVLLAGCATGPNANPADPIEPFNREVFRINDDLDKGVLKP 60 Query: 63 AAQAYDTVVPTPVQHGVGNFFGNIGDVWSSINQLLQGRIEQGVSTFMRVAINTTFGLGGV 122 AQ Y VVP+P + V NFF N GDV+S++N LLQ + + MRVAINT GLGG+ Sbjct: 61 VAQTYVDVVPSPARTAVSNFFSNAGDVYSAVNNLLQLKGTAALEDTMRVAINTVLGLGGL 120 Query: 123 LDVATEARLPREKSDFGQTLGKWGVGSGPYVVLPFFGPSTVRDTAGMPVDLYGDLWTYKR 182 +D+A++A LP+ K DFGQTLG WGV +G Y+V P GPSTVRDTAG VD D TY Sbjct: 121 IDIASDAGLPKHKEDFGQTLGVWGVPAGAYIVWPLLGPSTVRDTAGFLVDWQLDPLTYFN 180 Query: 183 PARWRNVGAVVRIVDRRAQLLDASTLLEDAALDKYDFVRDAYLQRRQSQI 232 + A +R+VD RA LL +LE+AA+DKY F+RDAYLQRR+ I Sbjct: 181 NSAVTYSLAALRVVDARAGLLGVGNVLEEAAVDKYTFMRDAYLQRRRYLI 230 >PA2800 [M] COG2853 Surface lipoprotein Pae Pseudomonas aeruginosa Length = 234 Score = 192 bits (487), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 102/213 (47%), Positives = 128/213 (60%), Gaps = 3/213 (1%) Query: 20 FALAAAALSGCASTSNNPNDPLEGFNRTMFSFNDTVDKVALKPAAQAYDTVVPTPVQHGV 79 A A+ AL+ S + + DP E NR +F+FNDT+D ALKP AQ Y V P VQ GV Sbjct: 16 LACASLALAPTLSLAASEEDPWESINRPIFTFNDTLDTYALKPLAQGYQKVTPNFVQDGV 75 Query: 80 GNFFGNIGDVWSSINQLLQGRIEQGVSTFMRVAINTTFGLGGVLDVATEARLPREKSDFG 139 NFF N+GDV + N LLQ + R+ N+TFGL G++DVAT L R DFG Sbjct: 76 HNFFNNLGDVKNLANNLLQAKFHNAGVDTSRLLFNSTFGLAGLIDVATPMGLQRNDEDFG 135 Query: 140 QTLGKWGVGSGPYVVLPFFGPSTVRDTAGMPVDLYGDLWTYKRPARWRNVGAVVRIVDRR 199 QTLG WGVGSGPYV+LPF GPST+RD D+Y + Y R RNV + VD R Sbjct: 136 QTLGYWGVGSGPYVMLPFLGPSTLRDAPAKIPDIYVSPYHYMDDVRARNVMFGINTVDTR 195 Query: 200 AQLLDASTLLEDAALDKYDFVRDAYLQRRQSQI 232 A LL + L+ DKY F+R+AYLQ R+ ++ Sbjct: 196 ANLLKSEKLISG---DKYIFIRNAYLQNREFKV 225 >NMB1961 [M] COG2853 Surface lipoprotein Nme Neisseria meningitidis MC58 Length = 275 Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 19 AFALAAAALSGCASTSNNPNDPLEGFNRTMFSFNDTVDKVALKPAAQAYDTVVPTPVQHG 78 AF L S A P DP EG+NR +F FND D+ PAA+ Y V P PV+ G Sbjct: 7 AFLLLIGFASAPAFAETRPADPYEGYNRAVFKFNDQADRYIFAPAARGYRKVAPKPVRAG 66 Query: 79 VGNFFGNIGDVWSSINQLLQGRIEQGVSTFMRVAINTTFGLGGVLDVATEARLPREKSDF 138 V NFF N+ DV S + +L+ I++ +RV INTTFGLGG++D+A +P K+ Sbjct: 67 VSNFFNNLCDVVSFGSNILRLDIKRASEDLVRVGINTTFGLGGLIDIAGAGGIPDNKNTL 126 Query: 139 GQTLGKWGVGSGPYVVLPFFGPSTVRDTAGMPV-DLYGDL-WTYKRPA-RWRNVGAVVRI 195 G T WG + Y VLP GPSTVRD G + +Y ++ P RW V Sbjct: 127 GDTFASWGWKNSNYFVLPVLGPSTVRDALGTGITSVYSPKNIVFRTPVGRWGTTA--VSA 184 Query: 196 VDRRAQLLDASTLLEDAALDKYDFVRDAYLQRRQSQINGASSSGGE 241 V R LLD + L++AA+DKY + RD Y++ R Q + G E Sbjct: 185 VSTREGLLDLTDSLDEAAIDKYSYTRDLYMKVRARQTGATPAEGTE 230 >NMA0490 [M] COG2853 Surface lipoprotein NmA Neisseria meningitidis Z2491 Length = 279 Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 19 AFALAAAALSGCASTSNNPNDPLEGFNRTMFSFNDTVDKVALKPAAQAYDTVVPTPVQHG 78 AF L S A P DP EG+NR +F FND D+ PAA+ Y V P PV+ G Sbjct: 7 AFLLLIGFASAPAFAETRPADPYEGYNRAVFKFNDQADRYIFAPAARGYRKVAPKPVRAG 66 Query: 79 VGNFFGNIGDVWSSINQLLQGRIEQGVSTFMRVAINTTFGLGGVLDVATEARLPREKSDF 138 V NFF N+ DV S + +L+ I++ +RV INTTFGLGG++D+A +P K+ Sbjct: 67 VSNFFNNLCDVVSFGSNILRLDIKRASEDLVRVGINTTFGLGGLIDIAGAGGIPDNKNTL 126 Query: 139 GQTLGKWGVGSGPYVVLPFFGPSTVRDTAGMPV-DLYGDL-WTYKRPA-RWRNVGAVVRI 195 G T WG + Y VLP GPSTVRD G + +Y ++ P RW V Sbjct: 127 GDTFASWGWKNSNYFVLPVLGPSTVRDALGTGITSVYSPKNIVFRTPVGRWGTTA--VSA 184 Query: 196 VDRRAQLLDASTLLEDAALDKYDFVRDAYLQRRQSQINGASSSGGE 241 V R LLD + L++AA+DKY + RD Y++ R Q + G E Sbjct: 185 VSTREGLLDLTDSLDEAAIDKYSYTRDLYMKVRARQTGATPAEGTE 230 >XF0416 [M] COG2853 Surface lipoprotein Xfa Xylella fastidiosa 9a5c Length = 351 Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 93/231 (40%), Positives = 122/231 (52%), Gaps = 13/231 (5%) Query: 13 YAGRLGAFALAAAALSGCASTSNNPN--------DPLEGFNRTMFSFNDTVDKVALKPAA 64 YA GA + + G + T+N P DP E +NR M FN +D+ +P A Sbjct: 87 YAALYGAISPSV----GHSGTNNIPKPNDTHTTYDPWERYNRAMHQFNVVIDRNLARPLA 142 Query: 65 QAYDTVVPTPVQHGVGNFFGNIGDVWSSINQLLQGRIEQGVSTFMRVAINTTFGLGGVLD 124 AY VVP Q GV NFF N+ + +NQ+LQ + T R +N+T GLGG+LD Sbjct: 143 NAYVHVVPKKAQVGVTNFFNNLSSPLTMVNQVLQNHPVYALQTLGRFLLNSTLGLGGILD 202 Query: 125 VATEARLPREKSDFGQTLGKWGVGSGPYVVLPFFGPSTVRDTAGMPVDLYGDLWTYKRPA 184 A+ A++PR +FGQTL WG + Y LP FGP TVRDT G+ DL L Sbjct: 203 PASAAKIPRRTENFGQTLALWGWYNSRYFELPLFGPRTVRDTFGLAGDLPLSLLRRIDNN 262 Query: 185 RWRNVGAVVRIVDRRAQLLDASTLLEDAALDKYDFVRDAYLQRRQSQINGA 235 WR +++VD RA+LL + D A+D Y RDA+LQRR QI A Sbjct: 263 TWRYSLQGLQLVDTRARLLSFDN-MRDGAVDDYALTRDAWLQRRNYQIQNA 312