BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3968.p (213 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2958 [Q] COG2854 ABC-type transport system involved in resist... 184 1e-46 NMB1963 [Q] COG2854 ABC-type transport system involved in resist... 99 7e-21 NMA0488 [Q] COG2854 ABC-type transport system involved in resist... 96 5e-20 STM3310 [Q] COG2854 ABC-type transport system involved in resist... 82 7e-16 yrbC [Q] COG2854 ABC-type transport system involved in resistanc... 80 2e-15 >RSc2958 [Q] COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component Rso Ralstonia solanacearum Length = 211 Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 98/207 (47%), Positives = 137/207 (66%), Gaps = 6/207 (2%) Query: 2 KMLTKLFAIAAFAIPALSFSGVAAAQEA-PDALVKRISSEVLDTAKNDKDIQAGDNSRIM 60 K+L LFA F + A AQEA VK +VL T K D D+++G+ ++ Sbjct: 4 KLLHSLFAGLTFMAAVAAVP--AHAQEADAQTTVKTAVDDVLATIKGDSDLRSGNMQKVF 61 Query: 61 QLVEQKILPYVDFERMTQLAAGRYWRQATPDQQKQLITQFRSLLVFTYSGALSQVRDQKI 120 QLV+QKI+P DF+R TQ+A GR+W QATP+QQ+Q+ F++LLV TY+GAL+ VR+Q + Sbjct: 62 QLVDQKIVPRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKTLLVRTYAGALANVRNQTV 121 Query: 121 VFKPLRAAPGDTEVEVNSQVISDRGGEPIQLSYRLEKKGDGWKLYDVNVLGAWLVEAYRG 180 +KP RAA DT+V V S V + GEP+ L YR+EK +GWK+YD+N+ G WL E Y+ Sbjct: 122 SYKPFRAAADDTDVVVRSTV--NNNGEPVALDYRMEKSANGWKVYDINISGLWLSETYKN 179 Query: 181 TFASEINK-GGIDGLIKALTDKNQQLA 206 FA I+K GG+ GL++ L ++N QLA Sbjct: 180 QFAEVISKRGGVSGLVQFLDERNAQLA 206 >NMB1963 [Q] COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component Nme Neisseria meningitidis MC58 Length = 196 Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 102/195 (52%), Gaps = 10/195 (5%) Query: 10 IAAFAIPALSFSGVAAAQEAPDALVKRISSEVLDTAKNDKDIQAGDNSRIMQLVEQKILP 69 I+A I LS AA + +++ +++VL KN GD + Q E +P Sbjct: 7 ISALGIGILSIGMAFAAPADAVSQIRQNATQVLSILKN------GDANTARQKAEAYAIP 60 Query: 70 YVDFERMTQLAAGRYWRQATPDQQKQLITQFRSLLVFTYSGALSQVRDQKIVFK--PLRA 127 Y DF+RMT LA G WR A+ Q++ L +F++LL+ TYSG + ++++ + K P+ Sbjct: 61 YFDFQRMTALAVGNPWRTASDAQKQALAKEFQTLLIRTYSGTMLKLKNANVNVKDNPI-V 119 Query: 128 APGDTEVEVNSQVISDRGGEPIQLSYRLEKKGDGWKLYDVNVLGAWLVEAYRGTFASEIN 187 G E+ V ++V G +P+ + + + G ++ Y+V + GA LV YR F I Sbjct: 120 NKGGKEIIVRAEV-GVPGQKPVNMDFTTYQSGGKYRTYNVAIEGASLVTVYRNQFGEIIK 178 Query: 188 KGGIDGLIKALTDKN 202 G+DGLI L KN Sbjct: 179 AKGVDGLIAELKAKN 193 >NMA0488 [Q] COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component NmA Neisseria meningitidis Z2491 Length = 196 Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 108/197 (54%), Gaps = 14/197 (7%) Query: 10 IAAFAIPALSFSGVAAAQEAPDAL--VKRISSEVLDTAKNDKDIQAGDNSRIMQLVEQKI 67 I+A I LS G+A A A DA+ +++ +++VL +++GD + Q E Sbjct: 7 ISALGIGILSI-GMAFAAPA-DAVNQIRQNATQVLSI------LKSGDANTARQKAEAYA 58 Query: 68 LPYVDFERMTQLAAGRYWRQATPDQQKQLITQFRSLLVFTYSGALSQVRDQKIVFK--PL 125 +PY DF+RMT LA G WR A+ Q++ L +F++LL+ TYSG + ++++ + K P+ Sbjct: 59 IPYFDFQRMTALAVGNPWRTASDAQKQALAKEFQTLLIRTYSGTMLKLKNANVNVKDNPI 118 Query: 126 RAAPGDTEVEVNSQVISDRGGEPIQLSYRLEKKGDGWKLYDVNVLGAWLVEAYRGTFASE 185 G E+ V ++V G +P+ + + + G ++ Y+V + GA LV YR F Sbjct: 119 -VNKGGKEIIVRAEV-GVPGQKPVNMDFTTYQSGGKYRTYNVAIEGASLVTVYRNQFGEI 176 Query: 186 INKGGIDGLIKALTDKN 202 I G+DGLI L KN Sbjct: 177 IKAKGVDGLIAELKAKN 193 >STM3310 [Q] COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component Sty Salmonella typhimurium LT2 Length = 211 Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 3/204 (1%) Query: 3 MLTKLFAIAAFAIPALSFSGVAAAQEAPDALVKRISSEVLDTAKNDKDIQAGDNSRIMQL 62 M +L +A I LS + AA Q P L+ + + D KN++ + + + Sbjct: 1 MFKRLMMVALLVIAPLS-AATAADQSNPYKLMNEAAQKTFDRLKNEQPKIRANPDYLRDV 59 Query: 63 VEQKILPYVDFERMTQLAAGRYWRQATPDQQKQLITQFRSLLVFTYSGALSQVRDQKIVF 122 V+Q++LPYV + L GRY+++ATP Q++ FR L Y AL+ Q Sbjct: 60 VDQELLPYVQVKYAGALVLGRYYKEATPAQREAYFAAFREYLKQAYGQALAMYHGQTYQI 119 Query: 123 KPLRAAPGDTEVEVNSQVISDRGGEPIQLSYRLEKKGD--GWKLYDVNVLGAWLVEAYRG 180 P + T V + +I G P++L ++ K W+ YD+ G ++ + Sbjct: 120 APEQPLGDATIVPIRVTIIDPNGRPPVRLDFQWRKNTQTGNWQAYDMIAEGVSMITTKQN 179 Query: 181 TFASEINKGGIDGLIKALTDKNQQ 204 ++ + GIDGL L +QQ Sbjct: 180 EWSDLLRTKGIDGLTAQLKSISQQ 203 >yrbC [Q] COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component Eco Escherichia coli K12 Length = 211 Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 91/204 (44%), Gaps = 3/204 (1%) Query: 3 MLTKLFAIAAFAIPALSFSGVAAAQEAPDALVKRISSEVLDTAKNDKDIQAGDNSRIMQL 62 M +L +A I LS + AA Q P L+ + + D KN++ + + + Sbjct: 1 MFKRLMMVALLVIAPLS-AATAADQTNPYKLMDEAAQKTFDRLKNEQPQIRANPDYLRTI 59 Query: 63 VEQKILPYVDFERMTQLAAGRYWRQATPDQQKQLITQFRSLLVFTYSGALSQVRDQKIVF 122 V+Q++LPYV + L G+Y++ ATP Q++ FR L Y AL+ Q Sbjct: 60 VDQELLPYVQVKYAGALVLGQYYKSATPAQREAYFAAFREYLKQAYGQALAMYHGQTYQI 119 Query: 123 KPLRAAPGDTEVEVNSQVISDRGGEPIQLSYRLEKKGD--GWKLYDVNVLGAWLVEAYRG 180 P + T V + +I G P++L ++ K W+ YD+ G ++ + Sbjct: 120 APEQPLGDKTIVPIRVTIIDPNGRPPVRLDFQWRKNSQTGNWQAYDMIAEGVSMITTKQN 179 Query: 181 TFASEINKGGIDGLIKALTDKNQQ 204 + + + GIDGL L +QQ Sbjct: 180 EWGTLLRTKGIDGLTAQLKSISQQ 203