BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3965.p (254 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2955 [V] COG0842 ABC-type multidrug transport system, permeas... 378 e-105 CC2244 Non COG 213 3e-55 VC0590 [V] COG0842 ABC-type multidrug transport system, permease... 187 3e-47 PM0471 [V] COG0842 ABC-type multidrug transport system, permease... 187 3e-47 yadH [V] COG0842 ABC-type multidrug transport system, permease c... 184 2e-46 >RSc2955 [V] COG0842 ABC-type multidrug transport system, permease component Rso Ralstonia solanacearum Length = 262 Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/248 (76%), Positives = 216/248 (87%) Query: 3 GFRTLFYKEILRFWKVATQTITAPVVTALLYLLIFGHVLQDRVQVYPGVNYTGFLVPGLV 62 GFRTL YKE+LRFWKV+ QT+ APV+TALLYLLIFGHVL+D VQV+ + YT FL+PGLV Sbjct: 14 GFRTLLYKEVLRFWKVSFQTVAAPVLTALLYLLIFGHVLEDHVQVFGQIGYTAFLIPGLV 73 Query: 63 MMSVLQNAFANSSSSLIQSKITGNLVFVLLTPLSHWEMFGGYVLAAVVRGLVVGAGVFVV 122 MMSVLQNAFANSSSSLIQSKITGNLVF++L PLSHWEMFG YV+A+V+RGL VGAGV VV Sbjct: 74 MMSVLQNAFANSSSSLIQSKITGNLVFIMLPPLSHWEMFGAYVVASVIRGLAVGAGVLVV 133 Query: 123 TVWFGHIDFVAPLWILVFALLGAGILGSLGLIAGIWAEKFDQLAAFQNFLIVPLTFLAGV 182 T WF H+ F PLWI+VFA+LGA +LG+LGLIAGIWAEKFDQLAAFQNFLIVP TFLAGV Sbjct: 134 TAWFAHLHFAQPLWIIVFAILGAAVLGTLGLIAGIWAEKFDQLAAFQNFLIVPATFLAGV 193 Query: 183 FYSIHSLPPFWQAVSHFNPFFYMIDGFRYGFFGQSDIAPMTSLGIVVVFFLALSTLAVHM 242 FYSIHSLP FWQ VSH NPFFYMIDGFRYGFFG SD+ TSLG++VV + + +A+ M Sbjct: 194 FYSIHSLPAFWQVVSHANPFFYMIDGFRYGFFGVSDVPVATSLGVMVVALVVVGGIALQM 253 Query: 243 LKSGYKLR 250 L++GYKLR Sbjct: 254 LRTGYKLR 261 >CC2244 Non COG Length = 273 Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 128/255 (50%), Positives = 165/255 (64%), Gaps = 10/255 (3%) Query: 3 GFRTLFYKEILRFWKVATQTITAPVVTALLYLLIFGHVLQDRVQVYPGVNYTGFLVPGLV 62 GF TL+ +EI RFWKV TQT+ APVVT LLY+L+F + GV + F+ PGL+ Sbjct: 23 GFVTLYQREIRRFWKVGTQTVAAPVVTTLLYMLVFVVAVGASRPAVGGVTFGHFVAPGLI 82 Query: 63 MMSVLQNAFANSSSSLIQSKITGNLVFVLLTPLSHWEMFGGYVLAAVVRGLVVGA-GVFV 121 MM++L NAFANSSSSLIQ+K+ G L PLS E + L A RG+VVGA V Sbjct: 83 MMAILNNAFANSSSSLIQAKMMGLTPDFLTPPLSALEQVSAFALGAATRGVVVGAVTAIV 142 Query: 122 VTVWFGHIDFVAPLW-ILVFALLGAGILGSLGLIAGIWAEKFDQLAAFQNFLIVPLTFLA 180 + V G VA LW +L F L + ILG G++AG+WAEKFDQLAA NFLI+P+TFL+ Sbjct: 143 IGVLPGAGLSVAHLWAVLYFGLTASLILGLAGVLAGLWAEKFDQLAAVTNFLIMPMTFLS 202 Query: 181 GVFYSIHSLPPFWQAVSHFNPFFYMIDGFRYGFFGQSD----IAPMTSLGIVVVFFLALS 236 G FY + LP +++ SHFNPFFY+IDGFRYGF G +D I +T+ + VV FL Sbjct: 203 GTFYLVDKLPEPFRSASHFNPFFYLIDGFRYGFIGHADGSIAIGVVTAGLLTVVMFLWCW 262 Query: 237 TLAVHMLKSGYKLRA 251 L V +GY+L++ Sbjct: 263 RLFV----TGYRLKS 273 >VC0590 [V] COG0842 ABC-type multidrug transport system, permease component Vch Vibrio cholerae Length = 256 Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 100/251 (39%), Positives = 157/251 (62%), Gaps = 4/251 (1%) Query: 3 GFRTLFYKEILRFWKVATQTITAPVVTALLYLLIFGHVLQDRVQVYPGVNYTGFLVPGLV 62 F +L KEI RF ++ QT+ P +T LY +IFG+++ R+ G +Y ++VPGL+ Sbjct: 8 AFCSLLGKEINRFTRIWVQTLVPPAITMTLYFIIFGNLIGSRIGQMNGFSYMEYIVPGLI 67 Query: 63 MMSVLQNAFANSSSSLIQSKITGNLVFVLLTPLSHWEMFGGYVLAAVVRGLVVGAGVFVV 122 MMSV+ N+++N +SS SK N+ +L+ P+ ++ + GYV+ V RGL+VGA V V Sbjct: 68 MMSVITNSYSNVASSFFSSKFQKNIEELLVAPVPNYVIIAGYVMGGVARGLLVGAMVTAV 127 Query: 123 TVWFGHIDFVAPLW-ILVFALLGAGILGSL-GLIAGIWAEKFDQLAAFQNFLIVPLTFLA 180 ++ F +D W I++ + ++ SL GLI ++A+ FD ++ F++ PLT+L Sbjct: 128 SLLF--VDLQVDHWGIIIATVFLTSVVFSLGGLINAVFAKTFDDISIVPTFVLTPLTYLG 185 Query: 181 GVFYSIHSLPPFWQAVSHFNPFFYMIDGFRYGFFGQSDIAPMTSLGIVVVFFLALSTLAV 240 GVFYSI LP FWQ+VS NP YM++ FRYGF G SD+ MTS +++ F +AL +A Sbjct: 186 GVFYSISLLPEFWQSVSKINPIVYMVNAFRYGFLGVSDVDIMTSFAVLMAFVVALYCVAH 245 Query: 241 HMLKSGYKLRA 251 +++ G LR+ Sbjct: 246 YLVTKGKGLRS 256 >PM0471 [V] COG0842 ABC-type multidrug transport system, permease component Pmu Pasteurella multocida Length = 255 Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 105/252 (41%), Positives = 150/252 (59%), Gaps = 4/252 (1%) Query: 2 IGFRTLFYKEILRFWKVATQTITAPVVTALLYLLIFGHVLQDRVQVYPGVNYTGFLVPGL 61 + F+T+ KEI RF ++ QT+ PV+T LY +IFG ++ R+ GV+Y F+VPGL Sbjct: 6 VAFQTIVMKEIRRFTRIWVQTLVPPVITMTLYFVIFGQLIGSRIGEMGGVSYMQFIVPGL 65 Query: 62 VMMSVLQNAFANSSSSLIQSKITGNLVFVLLTPLSHWEMFGGYVLAAVVRGLVVGAGVFV 121 +MMS L NAFAN +SS +K N+ +L++P S + GYV + RGL VG + V Sbjct: 66 IMMSSLTNAFANVASSFYSTKFAKNVEELLISPTSPHIIILGYVTGGMARGLCVG--ILV 123 Query: 122 VTVWFGHIDFVAPLW-ILVFALLGAGILGSLG-LIAGIWAEKFDQLAAFQNFLIVPLTFL 179 V + F W I+V L +LG LI ++A FD ++ F++ PLT+L Sbjct: 124 TMVALSFVAFEVHSWFIIVLTLCMTTATFALGGLINAVFARSFDDISIIPTFVLTPLTYL 183 Query: 180 AGVFYSIHSLPPFWQAVSHFNPFFYMIDGFRYGFFGQSDIAPMTSLGIVVVFFLALSTLA 239 GVFYS+ LPPFWQ VS NP YMI+GFRYGF G SD+ + G+++ F + L TLA Sbjct: 184 GGVFYSLTLLPPFWQWVSKLNPIVYMINGFRYGFLGISDVTVGYTFGVLIAFMVCLYTLA 243 Query: 240 VHMLKSGYKLRA 251 +++ G LR+ Sbjct: 244 YYLISRGIGLRS 255 >yadH [V] COG0842 ABC-type multidrug transport system, permease component Eco Escherichia coli K12 Length = 256 Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 101/252 (40%), Positives = 158/252 (62%), Gaps = 4/252 (1%) Query: 2 IGFRTLFYKEILRFWKVATQTITAPVVTALLYLLIFGHVLQDRVQVYPGVNYTGFLVPGL 61 + ++++ KEI RF ++ QT+ PV+T LY +IFG+++ R+ G +Y F+VPGL Sbjct: 7 VALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGNLIGSRIGDMHGFSYMQFIVPGL 66 Query: 62 VMMSVLQNAFANSSSSLIQSKITGNLVFVLLTPLSHWEMFGGYVLAAVVRGLVVGAGVFV 121 +MMSV+ NA+AN +SS +K N+ +L+ P+ + GYV V RGL VG V Sbjct: 67 IMMSVITNAYANVASSFFGAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLFVGILVTA 126 Query: 122 VTVWFGHIDFVAPLWILV-FALLGAGILGSL-GLIAGIWAEKFDQLAAFQNFLIVPLTFL 179 ++++F + F W+ V L+ +L SL GL+ G++A+ FD ++ F++ PLT+L Sbjct: 127 ISLFF--VPFQVHSWVFVALTLVLTAVLFSLAGLLNGVFAKTFDDISLVPTFVLTPLTYL 184 Query: 180 AGVFYSIHSLPPFWQAVSHFNPFFYMIDGFRYGFFGQSDIAPMTSLGIVVVFFLALSTLA 239 GVFYS+ LPPFWQ +SH NP YMI GFRYGF G +D+ +T+ G++VVF +A + Sbjct: 185 GGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGFLGINDVPLVTTFGVLVVFIVAFYLIC 244 Query: 240 VHMLKSGYKLRA 251 +++ G LR+ Sbjct: 245 WSLIQRGRGLRS 256