BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3950.p         (174 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2941 [U] COG1826 Sec-independent protein secretion pathway co...   152   3e-37
NMA0804 [U] COG1826 Sec-independent protein secretion pathway co...    94   1e-19
NMB0600 [U] COG1826 Sec-independent protein secretion pathway co...    94   1e-19
VC0087 [U] COG1826 Sec-independent protein secretion pathway com...    60   2e-09
XF0563 [U] COG1826 Sec-independent protein secretion pathway com...    59   5e-09

>RSc2941 [U] COG1826 Sec-independent protein secretion pathway components
           Rso Ralstonia solanacearum
          Length = 172

 Score =  152 bits (385), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/177 (46%), Positives = 115/177 (64%), Gaps = 9/177 (5%)

Query: 1   MIDIGLTKLALIGVVALVVIGPERLPKVARMAGTLFGRAQRYINDVKSEVSREMELDELR 60
           MID+G++KLALIG VALVVIGPERLPKVAR AG L GRAQRYI DVK+EVSRE+EL+ELR
Sbjct: 1   MIDLGISKLALIGAVALVVIGPERLPKVARTAGALIGRAQRYIADVKAEVSREIELEELR 60

Query: 61  KMQKDVQDAASDVSNSIHKSMSETEASINDAWNGG-DDSSSSDSASAGGSWTRTPDASLL 119
           KM+ + ++AA +V  +IH+ +S   + IN+  N    D +S  +A+    W   P  S  
Sbjct: 61  KMRTEFEEAARNVEQTIHQEVSRHTSEINERLNEALGDPASRQTATQAAEWRPAPAKSRN 120

Query: 120 AIKAKAFRRKKLSRTTGVPAWYKHQSGHKTRVISASARVAKYRRPVGTGKSAG--FF 174
                ++R K+L+    +P WY+ + G +    S +ARV ++R P+   +S G  FF
Sbjct: 121 G--RNSWRNKQLA----MPKWYRRKQGVRMWAQSGAARVKRHRPPIVAAQSRGRSFF 171


>NMA0804 [U] COG1826 Sec-independent protein secretion pathway components
          NmA Neisseria meningitidis Z2491
          Length = 228

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 67/94 (71%)

Query: 1  MIDIGLTKLALIGVVALVVIGPERLPKVARMAGTLFGRAQRYINDVKSEVSREMELDELR 60
          M D GL +L  +G++AL+V+GPERLP+ AR AG L GR QR++  VK E   ++EL+ELR
Sbjct: 1  MFDFGLGELVFVGIIALIVLGPERLPEAARTAGRLIGRLQRFVGSVKQEFDTQIELEELR 60

Query: 61 KMQKDVQDAASDVSNSIHKSMSETEASINDAWNG 94
          K +++ + AA+ V +S+ ++ ++ E +++D  +G
Sbjct: 61 KAKQEFEAAAAQVRDSLKETGTDMEGNLHDISDG 94


>NMB0600 [U] COG1826 Sec-independent protein secretion pathway components
          Nme Neisseria meningitidis MC58
          Length = 228

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 67/94 (71%)

Query: 1  MIDIGLTKLALIGVVALVVIGPERLPKVARMAGTLFGRAQRYINDVKSEVSREMELDELR 60
          M D GL +L  +G++AL+V+GPERLP+ AR AG L GR QR++  VK E   ++EL+ELR
Sbjct: 1  MFDFGLGELVFVGIIALIVLGPERLPEAARTAGRLIGRLQRFVGSVKQEFDTQIELEELR 60

Query: 61 KMQKDVQDAASDVSNSIHKSMSETEASINDAWNG 94
          K +++ + AA+ V +S+ ++ ++ E +++D  +G
Sbjct: 61 KAKQEFEAAAAQVRDSLKETGTDMEGNLHDISDG 94


>VC0087 [U] COG1826 Sec-independent protein secretion pathway components
          Vch Vibrio cholerae
          Length = 133

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 1  MIDIGLTKLALIGVVALVVIGPERLPKVARMAGTLFGRAQRYINDVKSEVSREMELDELR 60
          M DIG  +L LI +VALVV+GPERLP   R        A+   N VK E++ E+++ EL+
Sbjct: 1  MFDIGFWELVLIAIVALVVLGPERLPHAIRSVAKFVSAAKSMANSVKDELAHELKVQELQ 60

Query: 61 K-MQKDVQDAASDVSNSIHKSM 81
          + ++K  Q    ++S  + KS+
Sbjct: 61 ENLRKAEQMGMQNLSPELQKSV 82


>XF0563 [U] COG1826 Sec-independent protein secretion pathway components
          Xfa Xylella fastidiosa 9a5c
          Length = 140

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 30/39 (76%)

Query: 1  MIDIGLTKLALIGVVALVVIGPERLPKVARMAGTLFGRA 39
          M DIG ++L LI VVALVV+GPERLPK AR AG L  RA
Sbjct: 1  MFDIGFSELLLIAVVALVVLGPERLPKAARFAGLLVRRA 39