BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3948.p         (229 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF2023 [S] COG5587 Uncharacterized conserved protein Xfa Xylella...    79   9e-15
BMEI0590 [S] COG5587 Uncharacterized conserved protein Bme Bruce...    77   3e-14
mll1538 Non COG                                                        73   6e-13
RSp0090 [L] COG4974 Site-specific recombinase XerD Rso Ralstonia...    31   1.8  
RP106 [U] COG3704 Type IV secretory pathway, VirB6 components Rp...    30   6.0  

>XF2023 [S] COG5587 Uncharacterized conserved protein Xfa Xylella
           fastidiosa 9a5c
          Length = 237

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 97/189 (51%), Gaps = 16/189 (8%)

Query: 7   IQFLGELSENNNRAWFVMNKPRY-DILREEFLALTIKL------IAEISKFDPAIAGCNP 59
            ++  EL+ +N++ WF  +KP+Y + ++  FL L   L      I+E  + DP   G   
Sbjct: 19  FKYFQELAHHNDKMWFAAHKPQYIEHVQTPFLRLITDLQPCLADISEHYRADPRPQG--- 75

Query: 60  KKALFRINRDMRFSHDKRPYKTHFSAAITASGLKKPSQGGGPAYYFHINETGQLLIAGGE 119
             +LFRI RD RFS DK PYKT   A +  +   +  +   P++Y  + +  +  + GG 
Sbjct: 76  -GSLFRIYRDARFSKDKSPYKTWQGARLFHA---RRREVPTPSFYIQL-QPDESFVGGGI 130

Query: 120 YLPPTPRLRAIRNRVVEDAAGFTKMRKNKKLVATYGDLQEEGKLQRPPKGFDPDTPNIDY 179
           + P +   R IR  + ++ A +     + +   T+  L E+ KL R P+GF  D   +D 
Sbjct: 131 WQPASDTQRRIRQFIFDNPASWHTSAHDPQRRRTFT-LYEDEKLIRAPRGFPSDFTFLDD 189

Query: 180 VKLKSFIVW 188
           +K +S+++W
Sbjct: 190 LKHRSWVLW 198


>BMEI0590 [S] COG5587 Uncharacterized conserved protein Bme Brucella
           melitensis
          Length = 234

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 99/221 (44%), Gaps = 11/221 (4%)

Query: 7   IQFLGELSENNNRAWFVMNKPRYDI-LREEFLALTIKLIAEISKFDPAIAGCNPKKALFR 65
           I FL  L  + NR WF+ N+  ++  L+E    L   L A   K      G +  K+ FR
Sbjct: 12  IPFLRALDFHQNREWFLENRDLFEQHLKEPLGDLVETLTAHFEKASLPFKG-DWVKSQFR 70

Query: 66  INRDMRFSHDKRPYKTHFSAAITASGLKKPSQGGGPAYYFHINETG--QLLIAGGEYLPP 123
           I RD RFS DK PY  H SA ++ +G K    G    +Y  I   G          + P 
Sbjct: 71  IKRDTRFSRDKAPYNRHLSALLSQTGTKWDESG---CFYICIGLPGIRDCYACVAWWGPR 127

Query: 124 TPRLRAIRNRVVEDAAGFTKMRKNKKLVATYGDLQEEGKLQRPPKGFDPDT-PN-IDYVK 181
              L A+R  + E    F  M    KL      + +  +L+R P+GF+  T P+ +D ++
Sbjct: 128 KELLAAMRKAIAEKPDAFRAM--VAKLKKNGLKISDHDRLKRTPRGFEHVTEPDLVDAIR 185

Query: 182 LKSFIVWTEEDIRKKIPADLGKRVLEGFKDAYPLVQWLREI 222
            + F V  E +       DL  R+++  + A PL+ W R +
Sbjct: 186 NRHFAVRMEIEPETITNPDLADRLVDFAERARPLIDWARRV 226


>mll1538 Non COG
          Length = 229

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 102/220 (46%), Gaps = 13/220 (5%)

Query: 7   IQFLGELSENNNRAWFVMNKPRYDI-LREEFLALTIKLIAEISKFDPAIAGCNPKKALFR 65
           I FL  L  + +R WF+ N+  ++  LR+    L   L    ++    + G + KK+LFR
Sbjct: 12  IPFLKALDFHQSREWFLENRDLFEQELRDPLGDLVDTLTQRFAEAGLGLRG-DRKKSLFR 70

Query: 66  INRDMRFSHDKRPYKTHFSAAITASGLKKPSQGGGPAYYFHINETGQLLIAGGEYLPPTP 125
           INRD+RF+ DKRPY  H SA ++  G  K  QG    +Y HI   G    AG  +  P  
Sbjct: 71  INRDVRFAKDKRPYNRHVSAILSPDG-SKAVQG---VFYIHIGLEG--CFAGVAWWQPEA 124

Query: 126 RLRAIRNRVVEDAAGFTKMRKNKKLVATYG-DLQEEGKLQRPPKGFD--PDTPNIDYVKL 182
            L     R +E      + R   K +   G +L  E  ++R P+GF+   D   +  ++ 
Sbjct: 125 ALLLAMRRAIETWP--DRFRAMVKALKKNGLELSAEDAMKRTPRGFEHVTDKDLVAAIRN 182

Query: 183 KSFIVWTEEDIRKKIPADLGKRVLEGFKDAYPLVQWLREI 222
           + F V    D       +L + +++    A PL+ W R I
Sbjct: 183 RHFAVRHVVDPAGIHGPELVEELVDFTMRAKPLLDWGRAI 222


>RSp0090 [L] COG4974 Site-specific recombinase XerD Rso Ralstonia
           solanacearum
          Length = 347

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 169 GFDPDTPNIDYVKLKSFIVWTEEDIRKKIPADLGKRVLEGFK 210
           G+  DT     + ++ FIVW EE    + PAD+ + VLE ++
Sbjct: 34  GYSADTVRARRISIRRFIVWCEERGIAQ-PADVTRAVLERYQ 74


>RP106 [U] COG3704 Type IV secretory pathway, VirB6 components Rpr
           Rickettsia prowazekii
          Length = 971

 Score = 29.6 bits (65), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 141 FTKMRKNKKLVATYGDLQEEGKLQRPPKGFDPDTPNIDYVKLKSFI 186
           F+   K+K L+  Y DLQ    +  PP G  PD  N    K K++I
Sbjct: 304 FSWSDKSKNLLIEYEDLQCSNNVNIPPNGQCPDIVNNRSPKDKNYI 349