BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3943.p (468 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2928 [C] COG1290 Cytochrome b subunit of the bc complex Rso R... 640 0.0 PA4430 [C] COG1290 Cytochrome b subunit of the bc complex Pae Ps... 538 e-153 NMB2052 [C] COG1290 Cytochrome b subunit of the bc complex Nme N... 532 e-151 NMA0384 [C] COG1290 Cytochrome b subunit of the bc complex NmA N... 527 e-149 VC0574 [C] COG1290 Cytochrome b subunit of the bc complex Vch Vi... 444 e-124 >RSc2928 [C] COG1290 Cytochrome b subunit of the bc complex Rso Ralstonia solanacearum Length = 467 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/456 (73%), Positives = 380/456 (83%), Gaps = 8/456 (1%) Query: 20 LNWIDARFPLTATWKAHLSEYYAPKNFNFWYIFGSLALLVLVIQIVTGIFLVMHYKPDAN 79 L WIDARFPLT TWKAHLSEYYAPKNFNFWY FGSLALLVLVIQIVTGIFLVM+YKPD Sbjct: 13 LGWIDARFPLTETWKAHLSEYYAPKNFNFWYFFGSLALLVLVIQIVTGIFLVMNYKPDGT 72 Query: 80 L-------AFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMLRGLLYGSYRKPREL 132 L A+ASVE+IMR+VPWGWLVRYMHSTGASAFFIVVYLHM RG+LYGSYRKPREL Sbjct: 73 LNAAGIPVAYASVEFIMREVPWGWLVRYMHSTGASAFFIVVYLHMFRGMLYGSYRKPREL 132 Query: 133 VWLFGVGIFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLSLLIRGDYVVS 192 VW+FG IFLCLM EAF GYLLPWGQMSYWGAQVIVNLF AIP IGPDLSL IRGDYVVS Sbjct: 133 VWIFGCLIFLCLMAEAFMGYLLPWGQMSYWGAQVIVNLFSAIPLIGPDLSLWIRGDYVVS 192 Query: 193 DATLNRFFSFHVIAIPLVLIGLVAAHIIALHEVGSNNPDGVEIKEKTDENGVPLDGVPFH 252 DATLNRFFSFHVIA+PLVL+GLV AHIIALHEVGSNNPDGVEIK K DE G+PLDG+PFH Sbjct: 193 DATLNRFFSFHVIAVPLVLLGLVVAHIIALHEVGSNNPDGVEIKAKKDERGIPLDGIPFH 252 Query: 253 PYYTVHDIFGVSIFLLVFSAVIFFAPEMGGYFLEYNNFIPADSLKTPLHIAPVWYFTPFY 312 PYY+VHDI GV++FL +FSA++FFAPEMGGYFLE NNFIPADSLKTP HIAPVWYFTPFY Sbjct: 253 PYYSVHDIVGVAVFLFLFSAILFFAPEMGGYFLEANNFIPADSLKTPPHIAPVWYFTPFY 312 Query: 313 SILRATTADFMGWLIAGVAAYVALLVFKSRLTAKLKMASIVIGLVIIAGMLVFDAKFWGV 372 S+LRATT+ F+ L +A + LL + + + K+K ++ + +++ G DAKFWGV Sbjct: 313 SMLRATTSAFLPILWGFLAIMLGLLFVRCK-SMKIKGVAVAVAVILALGFAFIDAKFWGV 371 Query: 373 VLMGLSVVILGGLPWLDQSQVKSIRYRPSWHKYIYLVFGIAFVILGYLGVQPPTAIGTTV 432 V+MG SVVI +PWLDQS VKSIRYRP +HK + +F +AF +LGYLG+QPP+ G+ V Sbjct: 372 VVMGGSVVIFFFMPWLDQSPVKSIRYRPGFHKVLLGIFVVAFAVLGYLGIQPPSPAGSIV 431 Query: 433 SQVCSFIYLGFFLLMPWWSAAGTFKPVPERVVYHPH 468 SQ+ + +Y FFL MP WS GTFKPVPERV + PH Sbjct: 432 SQIGTIVYFAFFLAMPVWSRMGTFKPVPERVTFKPH 467 >PA4430 [C] COG1290 Cytochrome b subunit of the bc complex Pae Pseudomonas aeruginosa Length = 403 Score = 538 bits (1387), Expect = e-153, Method: Compositional matrix adjust. Identities = 270/447 (60%), Positives = 323/447 (72%), Gaps = 47/447 (10%) Query: 18 KALNWIDARFPLTATWKAHLSEYYAPKNFNFWYIFGSLALLVLVIQIVTGIFLVMHYKPD 77 K + W+DARFP T W+ HLS+YYAPKNFNFWY FGSLALLVLV QI+TGI+L M + P Sbjct: 3 KFMAWVDARFPATKMWEDHLSKYYAPKNFNFWYFFGSLALLVLVNQILTGIWLTMSFTPS 62 Query: 78 ANLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMLRGLLYGSYRKPRELVWLFG 137 A AFASVEYIMRDV +GW++RYMHSTGASAFFIVVYLHM RGLLYGSY+KPRELVW+FG Sbjct: 63 AEEAFASVEYIMRDVDYGWIIRYMHSTGASAFFIVVYLHMFRGLLYGSYQKPRELVWIFG 122 Query: 138 VGIFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLSLLIRGDYVVSDATLN 197 + I+L LM EAF GYLLPWGQMSYWGAQVI++LFGAIP +G DL+ IRGD+++S TLN Sbjct: 123 MLIYLALMAEAFMGYLLPWGQMSYWGAQVIISLFGAIPVVGEDLAQWIRGDFLISGITLN 182 Query: 198 RFFSFHVIAIPLVLIGLVAAHIIALHEVGSNNPDGVEIKEKTDENGVPLDGVPFHPYYTV 257 RFF+ HVIA+P+VL+GLV HI+ALHEVGSNNPDGV+IK+K DENGVPLDG+ FHPYYTV Sbjct: 183 RFFALHVIALPIVLLGLVVLHILALHEVGSNNPDGVDIKKKKDENGVPLDGIAFHPYYTV 242 Query: 258 HDIFGVSIFLLVFSAVIFFAPEMGGYFLEYNNFIPADSLKTPLHIAPVWYFTPFYSILRA 317 DI GV +FL +F VIFF PEMGGYFLE NF A+ KTP HIAPVWYFTPFY+ILRA Sbjct: 243 KDIVGVVVFLFIFCTVIFFFPEMGGYFLEKPNFEMANQFKTPEHIAPVWYFTPFYAILRA 302 Query: 318 TTADFMGWLIAGVAAYVALLVFKSRLTAKLKMASIVIGLVIIAGMLVFDAKFWGVVLMGL 377 MG VV MG Sbjct: 303 VPDKLMG-----------------------------------------------VVAMGA 315 Query: 378 SVVILGGLPWLDQSQVKSIRYRPSWHKYIYLVFGIAFVILGYLGVQPPTAIGTTVSQVCS 437 ++ +L LPWLD+S V+SIRY+ K ++F ++FVILGY G Q P+ +GTT+S+VC+ Sbjct: 316 AIAVLFVLPWLDRSPVRSIRYKGWLSKLWLVIFAVSFVILGYYGAQAPSPLGTTLSRVCT 375 Query: 438 FIYLGFFLLMPWWSAAGTFKPVPERVV 464 +Y FF+LMP+++ KPVPERV Sbjct: 376 VLYFAFFILMPFYTRMEKTKPVPERVT 402 >NMB2052 [C] COG1290 Cytochrome b subunit of the bc complex Nme Neisseria meningitidis MC58 Length = 449 Score = 532 bits (1370), Expect = e-151, Method: Compositional matrix adjust. Identities = 285/464 (61%), Positives = 333/464 (71%), Gaps = 51/464 (10%) Query: 9 LPDDAPAAAKAL-NWIDARFPLTATWKAHLSEYYAPKNFNFWYIFGSLALLVLVIQIVTG 67 + + + AKAL W+DARFPL+ WK HLSEYYAPKNFNFWY FGSL++LVLVIQIV+G Sbjct: 1 MANQTNSKAKALLGWVDARFPLSKMWKEHLSEYYAPKNFNFWYFFGSLSMLVLVIQIVSG 60 Query: 68 IFLVMHYKPDANL-------AFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMLRG 120 IFL M+YKPD NL AF +VEYIMRDV GW++RYMHSTGAS FFIVVYLHM RG Sbjct: 61 IFLTMNYKPDGNLNAYHLPAAFTAVEYIMRDVSGGWIIRYMHSTGASFFFIVVYLHMFRG 120 Query: 121 LLYGSYRKPRELVWLFGVGIFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPD 180 L+YGSY+KPRELVW+FG IFL LM EAF GYLLPWGQMS+WGAQVI+NLF AIP IGPD Sbjct: 121 LIYGSYKKPRELVWIFGSLIFLALMAEAFMGYLLPWGQMSFWGAQVIINLFSAIPVIGPD 180 Query: 181 LSLLIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVAAHIIALHEVGSNNPDGVEIKEKTD 240 LS IRGD+ VSD TLNRFF+ HVIA+PLVL+GLV AHIIALHEVGSNNPDGVEIK+ D Sbjct: 181 LSTWIRGDFNVSDVTLNRFFALHVIAVPLVLLGLVVAHIIALHEVGSNNPDGVEIKKLKD 240 Query: 241 ENGVPLDGVPFHPYYTVHDIFGVSIFLLVFSAVIFFAPEMGGYFLEYNNFIPADSLKTPL 300 ENGVPLDG+PF PYY VHDI V+IFL+VF AV+FFAPE GGYFLE NF A++LKTP Sbjct: 241 ENGVPLDGIPFFPYYVVHDILAVTIFLIVFCAVMFFAPEGGGYFLEAPNFDAANALKTPP 300 Query: 301 HIAPVWYFTPFYSILRATTADFMGWLIAGVAAYVALLVFKSRLTAKLKMASIVIGLVIIA 360 HIAPVWYFTPFY+ILRA + F G Sbjct: 301 HIAPVWYFTPFYAILRAIPS-FAG------------------------------------ 323 Query: 361 GMLVFDAKFWGVVLMGLSVVILGGLPWLDQSQVKSIRYRPSWHKYIYLVFGIAFVILGYL 420 + WGV+ MG +VV++ LPWLD+ +VKS+RYR K ++F IAF+ LG L Sbjct: 324 ------TQVWGVIGMGAAVVLIALLPWLDKGEVKSVRYRGPIFKTALVLFIIAFIGLGIL 377 Query: 421 GVQPPTAIGTTVSQVCSFIYLGFFLLMPWWSAAGTFKPVPERVV 464 G T T V+++ SF+Y FFL MP+++ T KPVPERV Sbjct: 378 GAMVATDTRTLVARILSFVYFAFFLGMPFYTKLDTNKPVPERVT 421 >NMA0384 [C] COG1290 Cytochrome b subunit of the bc complex NmA Neisseria meningitidis Z2491 Length = 449 Score = 527 bits (1358), Expect = e-149, Method: Compositional matrix adjust. Identities = 280/464 (60%), Positives = 332/464 (71%), Gaps = 51/464 (10%) Query: 9 LPDDAPAAAKAL-NWIDARFPLTATWKAHLSEYYAPKNFNFWYIFGSLALLVLVIQIVTG 67 + + + AKAL W+DARFPL+ W HL++YYAPKNFNFWY FGSLALLVLVIQIV+G Sbjct: 1 MANQTNSKAKALLGWMDARFPLSKMWNEHLAQYYAPKNFNFWYYFGSLALLVLVIQIVSG 60 Query: 68 IFLVMHYKPDANL-------AFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMLRG 120 IFL M+YKPD NL AF +VEYIMRDV GW++RYMHSTGAS FFIVVYLHM RG Sbjct: 61 IFLTMNYKPDGNLNAYHLPAAFTAVEYIMRDVSGGWIIRYMHSTGASFFFIVVYLHMFRG 120 Query: 121 LLYGSYRKPRELVWLFGVGIFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPD 180 L+YGSY+KPRELVW+FG IFL LM EAF GYLLPWGQMS+WGAQVI+NLF AIP IGPD Sbjct: 121 LIYGSYKKPRELVWIFGSLIFLALMAEAFMGYLLPWGQMSFWGAQVIINLFSAIPVIGPD 180 Query: 181 LSLLIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVAAHIIALHEVGSNNPDGVEIKEKTD 240 LS IRGD+ VSD TLNRFF+ HVIA+PLVL+GLV AHIIALHEVGSNNPDGVEIK+ D Sbjct: 181 LSTWIRGDFNVSDVTLNRFFALHVIAVPLVLLGLVVAHIIALHEVGSNNPDGVEIKKNKD 240 Query: 241 ENGVPLDGVPFHPYYTVHDIFGVSIFLLVFSAVIFFAPEMGGYFLEYNNFIPADSLKTPL 300 ENG+P DG+PFHPYYTV D+ GV +FL+VF AV+FFAPE GGYFLE NF A++LKTP Sbjct: 241 ENGIPRDGIPFHPYYTVKDVLGVVVFLIVFCAVLFFAPEGGGYFLEAPNFDAANALKTPP 300 Query: 301 HIAPVWYFTPFYSILRATTADFMGWLIAGVAAYVALLVFKSRLTAKLKMASIVIGLVIIA 360 HIAPVWYFTPFY+ILRA + F+G Sbjct: 301 HIAPVWYFTPFYAILRAIPS-FLG------------------------------------ 323 Query: 361 GMLVFDAKFWGVVLMGLSVVILGGLPWLDQSQVKSIRYRPSWHKYIYLVFGIAFVILGYL 420 + WGV+ MG +VV++ LPWLD+ +VKS+RYR K ++F I+F+ LG L Sbjct: 324 ------TQVWGVIGMGAAVVLIALLPWLDRGEVKSVRYRGPIFKTALVLFIISFIGLGIL 377 Query: 421 GVQPPTAIGTTVSQVCSFIYLGFFLLMPWWSAAGTFKPVPERVV 464 G T T V+++ SF+Y FFL MP+++ KPVPERV Sbjct: 378 GAMVATDTRTLVARILSFVYFAFFLGMPFYTKLDKNKPVPERVT 421 >VC0574 [C] COG1290 Cytochrome b subunit of the bc complex Vch Vibrio cholerae Length = 421 Score = 444 bits (1141), Expect = e-124, Method: Compositional matrix adjust. Identities = 246/463 (53%), Positives = 304/463 (65%), Gaps = 64/463 (13%) Query: 20 LNWIDARFPLTATWKAHLSEYYAPKNFNFWYIFGSLALLVLVIQIVTGIFLVMHYKPDAN 79 L+W++ R P +K HLSEY PKNFNFWY+FGSLA+LVLV Q++TGI+L M+Y P Sbjct: 5 LDWVEKRLPAMNAYKKHLSEYPMPKNFNFWYLFGSLAMLVLVNQLLTGIWLTMNYVPSGE 64 Query: 80 LAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMLRGLLYGSYRKPRELVWLFGVG 139 AFAS+EYIMRDV +GWL+RYMHSTGASAFF+VVYLHM RGL+YGSY+KPREL+W+FG+ Sbjct: 65 GAFASIEYIMRDVEYGWLLRYMHSTGASAFFVVVYLHMFRGLIYGSYQKPRELLWIFGML 124 Query: 140 IFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLSLLIRGDYVVSDATLNRF 199 IFL LM EAF GYLLPWGQMSYWGAQVI++LFGAIP IG DL+L IRGDYV+S ATLNRF Sbjct: 125 IFLVLMAEAFMGYLLPWGQMSYWGAQVIISLFGAIPVIGDDLTLWIRGDYVISGATLNRF 184 Query: 200 FSFHVIAIPLVLIGLVAAHIIALHEVGSNNPDGVEIKEKTDENGVP-------------- 245 F+ HVIA+P+VL+ L+ HI+ALHEVGSNNPDG+E K G Sbjct: 185 FALHVIALPIVLLLLIVLHILALHEVGSNNPDGIETKLPKGSMGEGYESQFKFHEYYTKK 244 Query: 246 ---LDGVPFHPYYTVHDIFGVSIFLLVFSAVIFFAPEMGGYFLEYNNFIPADSLKTPLHI 302 +D +PFHPY TV D+ GV+ FL +F V+FF PEMGGYFLE NF A+ LKTP HI Sbjct: 245 YDIIDSIPFHPYGTVKDLIGVAGFLFLFCYVLFFNPEMGGYFLEPPNFEAANPLKTPEHI 304 Query: 303 APVWYFTPFYSILRATTADFMGWLIAGVAAYVALLVFKSRLTAKLKMASIVIGLVIIAGM 362 APVWYFTPFY+ILRA +G Sbjct: 305 APVWYFTPFYAILRAVPDKLLG-------------------------------------- 326 Query: 363 LVFDAKFWGVVLMGLSVVILGGLPWLDQSQVKSIRYRPSWHKYIYLVFGIAFVILGYLGV 422 V+ MG S+V+L LPWLD+ +V+S RYR +H + F ++F+ LG LG Sbjct: 327 ---------VIAMGASIVVLFLLPWLDRCKVRSYRYRSKFHLFNIAQFTVSFIALGILGA 377 Query: 423 QPPTAIGTTVSQVCSFIYLGFFLLMPWWSAAGTFKPVPERVVY 465 P T T ++Q+ S Y FF+L+ ++S KP+P RV Y Sbjct: 378 LPATPTYTLLAQIFSLCYFMFFVLLFFYSKNEATKPLPTRVTY 420