BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3939.p (540 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl2824 [E] COG0747 ABC-type dipeptide transport system, peripla... 550 e-156 SMa1860 [E] COG0747 ABC-type dipeptide transport system, peripla... 548 e-155 mll7034 [E] COG0747 ABC-type dipeptide transport system, peripla... 533 e-151 SMc01642 [E] COG0747 ABC-type dipeptide transport system, peripl... 303 5e-82 mlr9210 [E] COG0747 ABC-type dipeptide transport system, peripla... 303 8e-82 >AGl2824 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 563 Score = 550 bits (1416), Expect = e-156, Method: Compositional matrix adjust. Identities = 266/517 (51%), Positives = 353/517 (68%) Query: 24 IREGFTRRDMMRTLMAGSLLTLGSTSLMAVSSSAMAQTPKRGGKLRMATQTSSTADTLDP 83 IR G TRR+++ ++AG + ++++ +S A+A TP GG L+ A +SSTADTLDP Sbjct: 47 IRRGATRRELLHMMLAGGVALSAGSAILGRASKAVAATPVSGGSLKAAGWSSSTADTLDP 106 Query: 84 AKAAHATDYTRVNLFYNGLTKLDSKLGPQMVLAEELLTTDAITWTVKLRKDVIFHDGKPF 143 AKA+ +TDY R Y+ LT LD PQM LAE + T DA TWTVKLR V FHDGK Sbjct: 107 AKASLSTDYVRCCALYSRLTFLDVSGTPQMELAESIETKDAKTWTVKLRSGVTFHDGKSL 166 Query: 144 TPADVVYSLMRHKDPAVASKVKVVADQIESVKATGPNEVQIKLAGANADLPVILSTAQFL 203 T DVVYSL RH DPAV SKV +A Q+ KA N V+I LA NADLP IL+ F+ Sbjct: 167 TADDVVYSLKRHLDPAVGSKVAKIAAQMTGFKAVDKNTVEITLANPNADLPSILALHHFM 226 Query: 204 IIRDGTTEFRTPNGTGAFKCKEFTPGVRTIGVRNENYWKSGMPYLDEVEVFGIPDEAARV 263 I+ DG T+F NGTGAFK ++F PGVR++ +N NYWKSG P+LD E I D+ ARV Sbjct: 227 IVADGATDFSKGNGTGAFKLEKFEPGVRSVMAKNANYWKSGGPHLDSFEFMAISDDNARV 286 Query: 264 NALLSGDVHWINDVNARSTERVRTSAGYTVIETRTGLYTDLVIRQDVAPGNSMDFTLGMK 323 NALLSGD+ +N R+ + G + +T +G YT+L IR D APGN DF GMK Sbjct: 287 NALLSGDIQLAAAINPRALRLLDKQDGVVMSKTTSGNYTNLNIRLDQAPGNKTDFVAGMK 346 Query: 324 YLMDREQIKNAAFRGYAVTANDQPIDPTNRFYFPGLPQRPYDPDKAKFHLQKAGVLGSTI 383 L++REQI AA RG NDQP+ P + +Y P L + +D DKAKFH +KAGV+G +I Sbjct: 347 SLINREQIIKAALRGLGEVGNDQPVPPMSPYYNPDLKPKAFDLDKAKFHFEKAGVIGQSI 406 Query: 384 PLVASAAATGSVDIAVLMQQSAQKIGLKLDVKRVPPDGYWSNQWMKVPLGFGNINPRPSA 443 P++AS AA S+D+A++MQ SA +IG+KLDV+RVP DGYWSN W+K P+ FGNINPRP+ Sbjct: 407 PVIASDAAGSSIDMAMIMQASAAQIGVKLDVQRVPSDGYWSNYWLKAPIHFGNINPRPTP 466 Query: 444 DILFTQLFKSDAQWNESGWKNAQFDQLLVAARGETDFNKRKQMYADMQTLVHEKCGIGIP 503 DILF+ L+ SDA WNES +K+ +FD++++ ARG D KRKQ+Y +M+ ++ ++ G IP Sbjct: 467 DILFSLLYASDAPWNESQYKSPKFDKMMLEARGLLDLEKRKQIYFEMERMIADEAGTIIP 526 Query: 504 VFIINLEGVNTKVKGITPVPLGAFMNYTCAEYVWLDA 540 +I N++ +++K+KG+ PLG M Y AEYVWL+A Sbjct: 527 AYISNVDAISSKLKGLEANPLGGMMGYAFAEYVWLEA 563 >SMa1860 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Sme Sinorhizobium meliloti Length = 536 Score = 548 bits (1412), Expect = e-155, Method: Compositional matrix adjust. Identities = 266/520 (51%), Positives = 357/520 (68%), Gaps = 2/520 (0%) Query: 22 SGIREGFTRRDMMRTLMAGSLLTLGSTSLMAVSSSAMAQTPKRGGKLRMATQTSSTADTL 81 + IR G TRR++++ ++AG + ++ + +A+A TP GG LR A ++STADTL Sbjct: 18 TAIRRGATRRELLQMMLAGGAALSAGSLVLGRAGNAVAATPVSGGTLRAAGWSASTADTL 77 Query: 82 DPAKAAHATDYTRVNLFYNGLTKLDSKLGPQMVLAEELLTTDAITWTVKLRKDVIFHDGK 141 DPAKA+ +TDY R FYN L LD PQM LAE + T DA TWTVKLRK V FHDGK Sbjct: 78 DPAKASLSTDYVRCCSFYNRLAFLDKGGTPQMELAEAIETKDAKTWTVKLRKGVTFHDGK 137 Query: 142 PFTPADVVYSLMRHKDPAVASKVKVVADQIESVKATGPNEVQIKLAGANADLPVILSTAQ 201 P DV++SL RH DP+V SKV +A Q+ KA V+I LA NADLP ILS Sbjct: 138 PLAADDVIFSLKRHLDPSVGSKVAKIAAQMTGFKAVDKQTVEITLASPNADLPTILSMHH 197 Query: 202 FLIIRDGTTEFRTPNGTGAFKCKEFTPGVRTIGVRNENYWKSGMPYLDEVEVFGIPDEAA 261 F+I+ DGTT+F NGTGAF + F PGVR++G++N+NYWKSG P +D E F I D+++ Sbjct: 198 FMIVADGTTDFSKGNGTGAFVREVFEPGVRSVGIKNKNYWKSG-PNVDSFEYFAISDDSS 256 Query: 262 RVNALLSGDVHWINDVNARSTERVRTS-AGYTVIETRTGLYTDLVIRQDVAPGNSMDFTL 320 RVNALLSGD+H +N RS V + AG+ + +T +G YT+L +R D+ PG+ DF Sbjct: 257 RVNALLSGDIHLAATINPRSMRLVESQGAGFVLSKTTSGNYTNLNMRLDMEPGSKRDFVE 316 Query: 321 GMKYLMDREQIKNAAFRGYAVTANDQPIDPTNRFYFPGLPQRPYDPDKAKFHLQKAGVLG 380 GMKYL++REQI +A RG NDQP+ P N ++ P L R +DP+KAKFH +KAG+LG Sbjct: 317 GMKYLVNREQIVKSALRGLGEVGNDQPVSPANFYHNPDLKPRAFDPEKAKFHFEKAGMLG 376 Query: 381 STIPLVASAAATGSVDIAVLMQQSAQKIGLKLDVKRVPPDGYWSNQWMKVPLGFGNINPR 440 +IP+VAS AA +VD+A+++Q SA +IGLKLDV+RVP DGYW N W+K P+ FGNINPR Sbjct: 377 QSIPVVASDAANSAVDMAMIIQASAAEIGLKLDVQRVPADGYWDNYWLKAPVHFGNINPR 436 Query: 441 PSADILFTQLFKSDAQWNESGWKNAQFDQLLVAARGETDFNKRKQMYADMQTLVHEKCGI 500 P+ DILF+ L+ S+A WNES +K+ +FD++L+ ARG D +RK +Y +MQ +V + G Sbjct: 437 PTPDILFSLLYSSEAPWNESQYKSEKFDKMLIEARGSLDQERRKAIYNEMQVMVASEAGT 496 Query: 501 GIPVFIINLEGVNTKVKGITPVPLGAFMNYTCAEYVWLDA 540 IP +I N++ + K+KG+ PLG M Y AEYVWL+A Sbjct: 497 IIPAYISNVDAITAKLKGLEANPLGGQMGYAFAEYVWLEA 536 >mll7034 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Mlo Mesorhizobium loti Length = 505 Score = 533 bits (1374), Expect = e-151, Method: Compositional matrix adjust. Identities = 256/491 (52%), Positives = 340/491 (69%) Query: 50 LMAVSSSAMAQTPKRGGKLRMATQTSSTADTLDPAKAAHATDYTRVNLFYNGLTKLDSKL 109 ++ +++A+A TP GG + A +SSTADTLDPAKA+ +TDY R YN LT LD Sbjct: 15 VLGRATNAVAATPVSGGTFKAAGWSSSTADTLDPAKASLSTDYVRCCSLYNRLTFLDKDG 74 Query: 110 GPQMVLAEELLTTDAITWTVKLRKDVIFHDGKPFTPADVVYSLMRHKDPAVASKVKVVAD 169 QM LAE + DA TWTVKLRK V FHDGK T DVVYSL RH D +V SKV +A Sbjct: 75 VTQMELAESFDSKDAKTWTVKLRKGVTFHDGKDLTADDVVYSLKRHLDKSVGSKVAKIAA 134 Query: 170 QIESVKATGPNEVQIKLAGANADLPVILSTAQFLIIRDGTTEFRTPNGTGAFKCKEFTPG 229 Q+ KA + V+I LA NADLP IL+ F+I++DGTT+F NGTGAF + F PG Sbjct: 135 QMTGFKAVDKSTVEITLADPNADLPTILALHHFMIVQDGTTDFSKGNGTGAFVLQTFEPG 194 Query: 230 VRTIGVRNENYWKSGMPYLDEVEVFGIPDEAARVNALLSGDVHWINDVNARSTERVRTSA 289 VR++ +N+NYWKSG PYLD E I D++ARVNALLSGD+++ +N R+ + + Sbjct: 195 VRSVVTKNKNYWKSGKPYLDSFEFIAISDDSARVNALLSGDINFAASINPRAMKLIGGQQ 254 Query: 290 GYTVIETRTGLYTDLVIRQDVAPGNSMDFTLGMKYLMDREQIKNAAFRGYAVTANDQPID 349 G+ + +T +G YTDL IR D+ PGN DF GMKYL++REQI +A RG NDQP+ Sbjct: 255 GFELSKTTSGNYTDLNIRLDMDPGNKADFVAGMKYLVNREQIVKSALRGLGEIGNDQPVS 314 Query: 350 PTNRFYFPGLPQRPYDPDKAKFHLQKAGVLGSTIPLVASAAATGSVDIAVLMQQSAQKIG 409 P N F+ P + + +DPDKAKFH QK+G+LG +IP++AS AAT S+D+AV++Q + IG Sbjct: 315 PANIFHNPDIKPKAFDPDKAKFHFQKSGLLGQSIPVIASDAATSSIDMAVIIQAAGADIG 374 Query: 410 LKLDVKRVPPDGYWSNQWMKVPLGFGNINPRPSADILFTQLFKSDAQWNESGWKNAQFDQ 469 +KLDV+RVP DGYW N W+K P+ FGNINPRP+ DILF+ L+ S+A WNES +K+ +FD+ Sbjct: 375 MKLDVQRVPSDGYWDNYWLKAPIHFGNINPRPTPDILFSLLYASNAPWNESQYKSEKFDK 434 Query: 470 LLVAARGETDFNKRKQMYADMQTLVHEKCGIGIPVFIINLEGVNTKVKGITPVPLGAFMN 529 LL+ ARG D KRK++Y MQ +V E+ G IP +I N++ +++KVKG+ PLG M Sbjct: 435 LLIEARGSLDQAKRKEIYNQMQVMVSEEAGTIIPAYISNVDALSSKVKGLEANPLGGMMG 494 Query: 530 YTCAEYVWLDA 540 Y AEY+WL+A Sbjct: 495 YAMAEYLWLEA 505 >SMc01642 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Sme Sinorhizobium meliloti Length = 538 Score = 303 bits (777), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 182/507 (35%), Positives = 269/507 (53%), Gaps = 8/507 (1%) Query: 39 AGSLLTLGSTSLMAVSSSAMAQTPKRGGKLRMATQTSSTADTLDPAKAAHATDYTRVNLF 98 A +L ST+ +SSA AQ PKRGG L++ + ++ D+ DPAKA + + Sbjct: 35 AAALGIAASTANTLFASSAAAQEPKRGGHLKLGLEGAAATDSRDPAKALSQFMFVVGRNW 94 Query: 99 YNGLTKLDSKLG-PQMVLAEELL-TTDAITWTVKLRKDVIFHDGKPFTPADVVYSLMRHK 156 + L + G P LAE + DA TWT +RK V FHDGK T DV+ +L RH Sbjct: 95 GDMLVESHPTTGEPVPALAESWEPSADAATWTFTIRKGVKFHDGKELTIDDVIKTLQRHT 154 Query: 157 DPAVASKVKVVADQIESVKATGPNEVQIKLAGANADLPVILSTAQFLIIRDGTTEFRTPN 216 D S V I+ +KA G +++ + L NADLP++L+ +I +G T+ P+ Sbjct: 155 DEKSESGALGVMKSIKEIKADG-DKLVLTLTEGNADLPLLLTDYHLIIQPNGGTD--NPD 211 Query: 217 ---GTGAFKCKEFTPGVRTIGVRNENYWKSGMPYLDEVEVFGIPDEAARVNALLSGDVHW 273 GTG +K F PGVR RN + W++ Y+D VE+ + D AR+ AL SG VH+ Sbjct: 212 AMIGTGPYKVASFEPGVRATFERNADDWRTDRGYVDSVELIAMNDATARIAALSSGQVHF 271 Query: 274 INDVNARSTERVRTSAGYTVIETRTGLYTDLVIRQDVAPGNSMDFTLGMKYLMDREQIKN 333 IN V+ ++ ++ + ++ T + ++ + AP ++ D + +KY MDRE + Sbjct: 272 INRVDPKTVNLLKKAPTVEILNTSGRGHYVFIMHCNTAPFDNNDLRMALKYAMDRETLVQ 331 Query: 334 AAFRGYAVTANDQPIDPTNRFYFPGLPQRPYDPDKAKFHLQKAGVLGSTIPLVASAAATG 393 GY ND PI+ T + G+ QR YDPDKA FH +K+G G + + A G Sbjct: 332 RILGGYGKVGNDFPINDTYALFPEGIEQRAYDPDKAAFHYKKSGHSGPVLLRTSDVAFPG 391 Query: 394 SVDIAVLMQQSAQKIGLKLDVKRVPPDGYWSNQWMKVPLGFGNINPRPSADILFTQLFKS 453 +VD AVL Q SA+K G++++VKR P DGYWSN W P RP+ D +++ + S Sbjct: 392 AVDAAVLYQASAKKAGIEIEVKREPGDGYWSNVWNVQPFSTSYWGGRPTQDQMYSTAYLS 451 Query: 454 DAQWNESGWKNAQFDQLLVAARGETDFNKRKQMYADMQTLVHEKCGIGIPVFIINLEGVN 513 A WN++ +K FD++L+ AR E D KRK MY M +V ++ G+ +P+F + Sbjct: 452 TADWNDTRFKRPDFDKILLEARSELDEAKRKDMYRTMAMMVRDEGGLILPMFNDFVNAAG 511 Query: 514 TKVKGITPVPLGAFMNYTCAEYVWLDA 540 VKG N A VWLDA Sbjct: 512 KTVKGYVHDIGNDMSNGYVATRVWLDA 538 >mlr9210 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Mlo Mesorhizobium loti Length = 527 Score = 303 bits (775), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 187/519 (36%), Positives = 270/519 (52%), Gaps = 9/519 (1%) Query: 22 SGIREGFTRRDMMRTLMAGSLLTLGSTSLMAVSSSAMAQTPKRGGKLRMATQTSSTADTL 81 SGI +RRD + A L + SL+ S++A A P +GG L+ Q + DTL Sbjct: 14 SGI---LSRRDFLGRAAALGLSAPFANSLL--SNAARAAQPVKGGTLKAGLQGGAATDTL 68 Query: 82 DPAKAAHATDYTRVNLFYNGLTKLDSKLGPQMVLAEELLTT-DAITWTVKLRKDVIFHDG 140 D A + + D T + L ++D K G Q LAEE ++ DA WT K+RK V FHDG Sbjct: 69 DTAHFSTSVDITFGRAWGEQLVQIDPKGGLQPALAEEWGSSKDAKVWTFKIRKGVHFHDG 128 Query: 141 KPFTPADVVYSLMRHKDPAVASKVKVVADQIESVKATGPNEVQIKLAGANADLPVILSTA 200 K TPADV+ ++ RH D S + I+ + G N V L NADLP ++ Sbjct: 129 KEMTPADVLATMERHSDKNSKSGALGIMQGIDKIAVDGQNVV-FTLKDPNADLPFLMDDY 187 Query: 201 QFLIIRDGTTEFRTPN-GTGAFKCKEFTPGVRTIGVRNENYWKSGMPYLDEVEVFGIPDE 259 +I +G + GTG +K PGVR G + YW+ + D+VEV I D Sbjct: 188 HLIIQPNGGKDNPAAGIGTGPYKVTTNEPGVRLGGEKFAGYWRDDRGFADQVEVIVINDA 247 Query: 260 AARVNALLSGDVHWINDVNARSTERVRTSAGYTVIETRTGLYTDLVIRQDVAPGNSMDFT 319 AR++AL SG VH +N V + + ++ G T+ + V R AP ++ D Sbjct: 248 TARMSALQSGQVHIVNFVQPKLVDLIKRVPGMTIRNVSGRGHYVFVARCKTAPFDNNDLR 307 Query: 320 LGMKYLMDREQIKNAAFRGYAVTANDQPIDPTNRFYFPGLPQRPYDPDKAKFHLQKAGVL 379 L +K+ +DR+++ + RGY ND PI+ F + QR YDPDKAKFH +K+G Sbjct: 308 LALKFAIDRDEMLDKVLRGYGTVGNDFPINAAYPL-FTEVEQRKYDPDKAKFHYKKSGHD 366 Query: 380 GSTIPLVASAAATGSVDIAVLMQQSAQKIGLKLDVKRVPPDGYWSNQWMKVPLGFGNINP 439 G + + A G+VD A L QQSA K G++L++KR P DGYWS W K P Sbjct: 367 GPVLLRTSDVAFPGAVDAAQLFQQSAAKAGIQLEIKREPGDGYWSEVWQKQPFCASYWGG 426 Query: 440 RPSADILFTQLFKSDAQWNESGWKNAQFDQLLVAARGETDFNKRKQMYADMQTLVHEKCG 499 RP+ D +++ + S A WNES + N +FD++L AR E D KRK++YADM T+V+++ G Sbjct: 427 RPTQDQMYSVGYYSKADWNESQFVNDKFDKMLFQARAELDPEKRKKIYADMGTIVNQEGG 486 Query: 500 IGIPVFIINLEGVNTKVKGITPVPLGAFMNYTCAEYVWL 538 +P+F ++ KV+G P Y W+ Sbjct: 487 TIVPMFNQFIDATGAKVEGWIDDPNYELSGYYALSRCWI 525