BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3922.p         (162 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0746 [S] COG3518 Uncharacterized protein conserved in bacteri...   180   1e-45
STM0269 [S] COG3518 Uncharacterized protein conserved in bacteri...    61   1e-09
mlr2341 Non COG                                                        48   9e-06
YPO3705 [S] COG3518 Uncharacterized protein conserved in bacteri...    46   3e-05
PA0087 [S] COG3518 Uncharacterized protein conserved in bacteria...    45   7e-05

>RSp0746 [S] COG3518 Uncharacterized protein conserved in bacteria Rso
           Ralstonia solanacearum
          Length = 157

 Score =  180 bits (456), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 114/156 (73%)

Query: 1   MKGFAPSLFDKLMNEGAKSSFSPIVSRLSIEELKDAVARDLEAMLNTRSVISDELLQQYP 60
           MKGF PSL DKL ++   +     + +LS+EELK  VARD+E++LNTR V  ++ LQ  P
Sbjct: 1   MKGFEPSLLDKLFDDEPHAPLPTALRQLSLEELKSTVARDIESLLNTRIVFEEDDLQSLP 60

Query: 61  ECSGSIIAYGLNDFAGMSLASLDDRMAICSALEQAITRHEPRLRNVKATLEIQEGSINRL 120
           EC  S++ YGLNDFAG+SLAS  DR  IC +L +AI RHEPRL++V  +LEI E + N L
Sbjct: 61  ECKRSLLTYGLNDFAGLSLASFYDRNYICQSLTKAIERHEPRLQHVSVSLEINERATNAL 120

Query: 121 NFAITALLVVNAARETVNFDAVLQPSTLQYSISKSR 156
            F ITA+L+V  ARE V+FDA+LQPSTL+YS+S+ R
Sbjct: 121 CFGITAVLLVGPAREPVSFDAMLQPSTLRYSVSRGR 156


>STM0269 [S] COG3518 Uncharacterized protein conserved in bacteria Sty
           Salmonella typhimurium LT2
          Length = 164

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 15/128 (11%)

Query: 6   PSLFDKLMNEGAKSSFSPIVSRLSIEELKDAVARDLEAMLNTRSVISDELLQQYPECSGS 65
           P+LFD+L +          +S   ++ LK+ + RDL  +LNT S   D   ++YP+ + S
Sbjct: 14  PTLFDRLCDNAPYQKIDRDISVTPVQ-LKEIIRRDLSFLLNTISHEGDIDARRYPQAAAS 72

Query: 66  IIAYGLNDFAG--MSLASLDDRMAICSALEQAITRHEPRLRNVKATLEI-------QEGS 116
           ++ YGL   AG  M     DD   I  A+ +AI R EPRL    ATL +       ++GS
Sbjct: 73  VLNYGLPPLAGSFMYEHKWDD---ISEAIRRAIIRFEPRLN--AATLRVTPLLDKTRQGS 127

Query: 117 INRLNFAI 124
            N L F I
Sbjct: 128 YNTLQFEI 135


>mlr2341 Non COG
          Length = 250

 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 23/130 (17%)

Query: 33  LKDAVARDLEAMLNTRSVIS-------------DEL--LQQYPECSGSIIAYGLNDFAGM 77
           L++AV RD+EA+ NT    S             DEL  L  +PE   S++ YG+  F+G 
Sbjct: 111 LREAVRRDIEALFNTERFESVPMLSDAEHEQPLDELPSLADFPEVRRSVVNYGVPSFSGR 170

Query: 78  SLASLDDRMAICSALEQAITRHEPRLRNVKATLEIQEGSIN-RLNFAITALLVVNAA--- 133
           S     DR  +   +   +   EPRL+    T+ +  G  N  L   I A+L++      
Sbjct: 171 SSRDF-DRDVLAREIRAVLATFEPRLKESATTVNVTLGDKNVGLKIEIDAVLIMAPTPER 229

Query: 134 ---RETVNFD 140
              R T+N D
Sbjct: 230 MRLRTTINLD 239


>YPO3705 [S] COG3518 Uncharacterized protein conserved in bacteria Ype
           Yersinia pestis
          Length = 146

 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 16/142 (11%)

Query: 2   KGFAPSLFDKLMNEGAKSSFSPIVSRLSIEELKDAVARDLEAMLNTRSVISDELLQQYPE 61
           +G + SLFD++  +GA SS     S   + EL +++ + L  +LN+R           P 
Sbjct: 9   RGSSASLFDRIQGKGASSS-----SDGRLRELLNSIQKHLNEVLNSR-----------PG 52

Query: 62  CSGSIIAYGLNDFAGMSLASLDDRMAICSALEQAITRHEPRLRNVKATLEIQEGSINRLN 121
              S +  G+ D    +  S D R +I  A++  I  +EPR+  V     +  G   +L+
Sbjct: 53  ACQSAVDLGVIDLNDATATSSDFRKSIEKAIKDCIENYEPRISAVTVQSLLNHGDPLQLS 112

Query: 122 FAITALLVVNAARETVNFDAVL 143
           F I+A +  +   + V F+  L
Sbjct: 113 FHISARVNFDDMGDVVEFNIQL 134


>PA0087 [S] COG3518 Uncharacterized protein conserved in bacteria Pae
           Pseudomonas aeruginosa
          Length = 169

 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Query: 6   PSLFDKLMNEGAKSSFSPIVSR-LSIEELKDAVARDLEAMLNTRSVISDELLQQYPECSG 64
           PSL D+L ++   +       R L++ +LK +V RDL  + NT S+       + P    
Sbjct: 12  PSLLDRLTDDEPGNLKEAAERRVLTLNQLKASVLRDLAWLFNTTSLFDHGPAARMP-AGN 70

Query: 65  SIIAYGLNDFAGMSLASLDDRMAICSALEQAITRHEPRL----RNVKATLEIQEGSINRL 120
           S++ YGL   AG + +S+D   AI + L + I   EPR+      V+A L   E   N L
Sbjct: 71  SVLNYGLPALAGHTASSVDVH-AIEALLTETIATFEPRIIRSSLRVRAQLLPGEMDHNAL 129

Query: 121 NFAITALLVVNAA 133
           +F I   L    A
Sbjct: 130 SFEIEGDLWAEPA 142