BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3908.p         (185 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3291 Non COG                                                         42   8e-04
PA3292 Non COG                                                         41   0.001
DR0076 [H] COG0303 Molybdopterin biosynthesis enzyme Dra Deinoco...    29   5.5  

>PA3291 Non COG
          Length = 184

 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 12/84 (14%)

Query: 11 LVLVTSLLLASSSARAGEPVMLG-IVGYNYTNHYIDQFYVDGTGGGNIYVSTPTSGGGGT 69
          LV+  S      + +AG  V+   ++GYN+T+  I++F V+G GG N+    P  G G  
Sbjct: 18 LVVFLSTFFGLVACQAGPEVLSAPVMGYNHTSAAINEFTVNGAGGPNL---GPYQGDGSQ 74

Query: 70 TCC----VRYYPGSSLPLKIHVKW 89
           CC     R+ P     LK+ V+W
Sbjct: 75 VCCGVIPKRWNPN----LKVIVEW 94


>PA3292 Non COG
          Length = 285

 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 10  LLVLVTSLLLASSSARAGEPVMLGIVGYNYTNHYIDQFYVDGTGGGNIYVSTPTSGGGGT 69
           L+ L+   L   +     + V   I GYN+T+  I++F V+G GG N+    P  GG G 
Sbjct: 185 LIALLIGFLFLQACQAGSDMVSTPIGGYNHTSAAINRFSVNGAGGLNL---GPFQGGAGQ 241

Query: 70  TCC 72
            CC
Sbjct: 242 VCC 244



 Score = 32.3 bits (72), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 29 PVMLG--IVGYNYTNHYIDQFYVDGTGGGNIYVSTPTSGGGGTTCCVRYYPGSSLPLKIH 86
          P ML   ++GYN+T+  I+ F V+G GG  +    P  G G   CC       +  LK  
Sbjct: 25 PDMLAAPVMGYNHTSAAINWFSVNGAGGPRL---GPYQGDGSQVCCGVIPKKWNPNLKAV 81

Query: 87 VKW 89
          V+W
Sbjct: 82 VEW 84


>DR0076 [H] COG0303 Molybdopterin biosynthesis enzyme Dra Deinococcus
           radiodurans
          Length = 401

 Score = 29.3 bits (64), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 25/95 (26%)

Query: 23  SARAGEPVMLGIVGYNYTNHYIDQFYVDGTGGGNIYVSTPTSGGGGTTCCVRYYPGSSLP 82
           +A AG PV L +VG +                       P +G  G   CVR Y G+ LP
Sbjct: 71  TASAGAPVALRVVGESRAGE-------------------PFAGEVGPGECVRIYTGAPLP 111

Query: 83  LKIHVKWTDSACMFPELQPGVG-SYIKPKTIERIK 116
                  TD+ C   +L+ G G S ++  T+E ++
Sbjct: 112 -----PGTDAICPVEQLREGEGTSAVERGTVELLR 141