BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3906.p (507 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 345 1e-94 RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 331 3e-90 RSc1234 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 330 6e-90 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 326 7e-89 YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 323 7e-88 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 345 bits (885), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 235/524 (44%), Positives = 331/524 (63%), Gaps = 22/524 (4%) Query: 1 MKIGIRLGGSFMLLTLLACVLIIASILTL----TRIGQ-HWDNFSGTVLNKQDYATQGYI 55 M+IG+RLG +F L+ L + I L T++GQ + +S L+ Q GY Sbjct: 6 MRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQ-IKNNGY- 63 Query: 56 KLGESVHNFKNYILRGKDYDQQFLADMDAIANLVAQ-YRKLG--VDDPKEEALLQKISSG 112 K + N ++ + ++++D AI AQ Y +L + + +AL ++ Sbjct: 64 KANGILSNL--LLVTTPEQKTKYMSDYAAIRQANAQAYGRLEKLLTTDQGKALFKEQFDA 121 Query: 113 ERNYRQALAKVQSLKAAGTSITDIDASISGADKILGAGFAGLLAIAHENTNGTGQK-ISA 171 Y ++ K +L A ++ + A G L + L+ ++ G + +S Sbjct: 122 RSAYGASVRKFFALVDA-DNVQEARALYQGDMSRLQDRYYVLVDKMVDHQAGEMEHDVSE 180 Query: 172 AISAGKSIELGVGVLVV---VLAAALATLATRSITRPVREAVQIAKTVAAGDLGSRIEVT 228 A + G + ++ + VL V +LA A TR+ITRP+ A+ +A+ VA G+L +EV Sbjct: 181 AAAQGANAKIQMIVLAVLATLLAIATGAFITRTITRPINHAMHLAEAVAQGNLTHLLEVD 240 Query: 229 RKDETGELLQALKDMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEE 288 +DE G LL ALK M +L +V VR G+DTI AS+++A GN+DLS+RTEQQASSLEE Sbjct: 241 TQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSLEE 300 Query: 289 TAAAMEQITSTVRRNADHARQANAMAGSVSEVASRSGLVVSDVVSTMDEIQASAREIAEI 348 TAAAMEQ+TSTV++NAD+A++A+ +A + S VA++ G V + + TM I S+R+I +I Sbjct: 301 TAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIVDI 360 Query: 349 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEIKDLIGNS 408 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AAKEIK LI +S Sbjct: 361 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIEDS 420 Query: 409 VEKVETGSKLVKDAGATIEELVMNVRNVTQIMSEISAASGEQEAGIEQVNQAIVQMDTVT 468 V V TG+ V++AG I ++V ++NVT I+SEISA+S EQ GIEQ+N+AI QMD T Sbjct: 421 VGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDKAT 480 Query: 469 QQNAALVEEAAAATEALKEQARRLAESVSVFRL-----GVGRMA 507 Q+NA+LVEE+A A +AL++QA +LA+ VS F+L G GR A Sbjct: 481 QENASLVEESATAAQALQDQANQLADMVSTFKLHADLSGRGRAA 524 >RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 524 Score = 331 bits (848), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 192/307 (62%), Positives = 246/307 (80%), Gaps = 4/307 (1%) Query: 200 RSITRPVREAVQIAKTVAAGDLGSRIEVT----RKDETGELLQALKDMNSSLQRVVGGVR 255 R++ RP+ A+ + + +AAGDL +R++ R+DET L+ A+ M SSLQ++VG VR Sbjct: 216 RTLVRPLERAIHVFERMAAGDLATRMDEPTRAGRRDETARLMHAVASMQSSLQKMVGQVR 275 Query: 256 TGSDTIVTASTQIAGGNLDLSARTEQQASSLEETAAAMEQITSTVRRNADHARQANAMAG 315 TGSD+I +A+ QIA GN DLS RTEQQASSLEETA++ME++TS V++NAD+ARQA+ +A Sbjct: 276 TGSDSIASATKQIAAGNADLSQRTEQQASSLEETASSMEELTSIVKQNADNARQASTLAV 335 Query: 316 SVSEVASRSGLVVSDVVSTMDEIQASAREIAEIISVIDGIAFQTNILALNAAVEAARAGE 375 + S+VA + G VV VV TM I S+++IA+II VI+GIAFQTNILALNAAVEAARAGE Sbjct: 336 NASDVAVKGGEVVGRVVETMAGINGSSKKIADIIGVIEGIAFQTNILALNAAVEAARAGE 395 Query: 376 QGRGFAVVASEVRNLAQRSATAAKEIKDLIGNSVEKVETGSKLVKDAGATIEELVMNVRN 435 QGRGFAVVA EVR+LAQRSA AAKEIK+LI +SV++V+ GSKLV +AG I+E+V+ V+ Sbjct: 396 QGRGFAVVAGEVRSLAQRSAGAAKEIKELISDSVDRVQNGSKLVAEAGTVIDEVVVAVKR 455 Query: 436 VTQIMSEISAASGEQEAGIEQVNQAIVQMDTVTQQNAALVEEAAAATEALKEQARRLAES 495 VT IM EISAAS EQ +GIEQVNQA+ QMD VTQQNAALVE+AAAA E+L+ QA L ++ Sbjct: 456 VTDIMGEISAASDEQSSGIEQVNQAVNQMDEVTQQNAALVEQAAAAAESLEAQAEALRQA 515 Query: 496 VSVFRLG 502 VS FR+G Sbjct: 516 VSAFRVG 522 >RSc1234 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 514 Score = 330 bits (845), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 217/454 (47%), Positives = 291/454 (64%), Gaps = 20/454 (4%) Query: 61 VHNFKNYILRGK---DYDQQFLADMDAIANLVAQYRKLGVDDP--KEEALLQKISSGERN 115 V +K+ +LRGK D+ + A ++ Q R L P K L+ + ++ Sbjct: 61 VQEWKDTLLRGKVQATRDKHWAAFGQREQDVAGQARALQASLPPGKSRDLVGQFAAAHAT 120 Query: 116 YRQALAK-VQSLKAAGTSITDIDASISGADK----ILGAG---FAGLLAIAHENTNGTGQ 167 Q K +S AA T D ++G D+ +L A A T T Sbjct: 121 MGQGYRKGYESFVAAAFDPTVGDQVVTGVDREPSRLLDEAAREIAAESAAVSARTAATAH 180 Query: 168 KISAAISAGKSIELGVGVLVVVLAAALATLATRSITRPVREAVQIAKTVAAGDLGSRIEV 227 + + G+G+ A A L +RSITRP+ AV++A+TVA GDLGS E Sbjct: 181 TVLVVSVVLMLVAFGLGL-------AGAFLFSRSITRPLSRAVEVARTVAQGDLGSAFEA 233 Query: 228 TRKDETGELLQALKDMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLE 287 DE +LL AL++M SL +VV VR ++ + +AS QIA GNL+LS+RTE+QA+SLE Sbjct: 234 RGSDEIAQLLIALREMQGSLAKVVSEVRRNAEGVASASAQIASGNLNLSSRTEEQAASLE 293 Query: 288 ETAAAMEQITSTVRRNADHARQANAMAGSVSEVASRSGLVVSDVVSTMDEIQASAREIAE 347 ETAA M ++TSTVR N+++A QA+ +AG S+ A+R G V++DVV TM I S+ ++ E Sbjct: 294 ETAANMGELTSTVRLNSENAVQASTLAGHASDTAARGGKVMTDVVETMQGISESSAKVGE 353 Query: 348 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEIKDLIGN 407 II VID IAFQTNILALNAAVEAARAGEQGRGFAVVA EVR LAQRSA+AAKEIK LIG Sbjct: 354 IIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSASAAKEIKGLIGQ 413 Query: 408 SVEKVETGSKLVKDAGATIEELVMNVRNVTQIMSEISAASGEQEAGIEQVNQAIVQMDTV 467 S E+VE G++LV++AG I+E+V +V+ VTQI+SEIS+AS EQ GIEQVN A+ Q++ V Sbjct: 414 SAERVEAGARLVQEAGGIIDEIVASVQRVTQIVSEISSASAEQSTGIEQVNIAVGQIEEV 473 Query: 468 TQQNAALVEEAAAATEALKEQARRLAESVSVFRL 501 TQQNAALVEEA+AA + + +QA L +V++FR+ Sbjct: 474 TQQNAALVEEASAAAQQMADQADALRRAVAIFRV 507 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 326 bits (836), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 180/302 (59%), Positives = 230/302 (76%) Query: 202 ITRPVREAVQIAKTVAAGDLGSRIEVTRKDETGELLQALKDMNSSLQRVVGGVRTGSDTI 261 + P+ + K +A GDL IEV ++E G L +LK M S L +VG VR G+D I Sbjct: 218 LIHPLNHLIAHIKHIANGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAI 277 Query: 262 VTASTQIAGGNLDLSARTEQQASSLEETAAAMEQITSTVRRNADHARQANAMAGSVSEVA 321 + +++IA GN DLSARTEQQA+SLEETAA+MEQ+T+TV++NA++ARQA+ +A S SE A Sbjct: 278 YSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASETA 337 Query: 322 SRSGLVVSDVVSTMDEIQASAREIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 381 + G VV+DVV TM EI S+++IA+I SVIDGIAFQTNILALNAAVEAARAGEQGRGFA Sbjct: 338 QKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFA 397 Query: 382 VVASEVRNLAQRSATAAKEIKDLIGNSVEKVETGSKLVKDAGATIEELVMNVRNVTQIMS 441 VVA EVRNLAQRSA AAKEIK LI +SV +V+ GS LV+ AG T+ ++V V VT IM Sbjct: 398 VVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMG 457 Query: 442 EISAASGEQEAGIEQVNQAIVQMDTVTQQNAALVEEAAAATEALKEQARRLAESVSVFRL 501 EI++AS EQ GI+Q+ QA+ +MD VTQQNA+LVEE+A+A +L+EQA L +++SVF L Sbjct: 458 EIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVFVL 517 Query: 502 GV 503 V Sbjct: 518 SV 519 >YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 649 Score = 323 bits (827), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 174/303 (57%), Positives = 231/303 (76%) Query: 199 TRSITRPVREAVQIAKTVAAGDLGSRIEVTRKDETGELLQALKDMNSSLQRVVGGVRTGS 258 TR IT P+R + +A+ +A GDL + +R DE G L+ A+ MN +L+ ++ +R G Sbjct: 309 TRQITVPLRATLDMAERIATGDLTAATTSSRTDELGMLMNAVARMNENLRAMIDEIRIGV 368 Query: 259 DTIVTASTQIAGGNLDLSARTEQQASSLEETAAAMEQITSTVRRNADHARQANAMAGSVS 318 + AS +IA GN DLS+RTEQQA+++EETAA+MEQ+ +TV++N D+A AN +A S Sbjct: 369 SQVSHASGEIAAGNTDLSSRTEQQAAAVEETAASMEQLNATVKQNTDNAHHANQLATEAS 428 Query: 319 EVASRSGLVVSDVVSTMDEIQASAREIAEIISVIDGIAFQTNILALNAAVEAARAGEQGR 378 + A + G +V+DVV TM++I S++ I+EI SVI+ IAFQTNILALNAAVEAARAGEQGR Sbjct: 429 QTAQQGGKLVNDVVRTMNDISGSSKRISEITSVINSIAFQTNILALNAAVEAARAGEQGR 488 Query: 379 GFAVVASEVRNLAQRSATAAKEIKDLIGNSVEKVETGSKLVKDAGATIEELVMNVRNVTQ 438 GFAVVASEVRNLAQRSA AAKEI+ LIG SV +V G+ LVK+AG T+EE+V +V +V Sbjct: 489 GFAVVASEVRNLAQRSAQAAKEIEGLIGESVSQVNAGTSLVKNAGNTMEEIVRSVSHVRD 548 Query: 439 IMSEISAASGEQEAGIEQVNQAIVQMDTVTQQNAALVEEAAAATEALKEQARRLAESVSV 498 IM+EI++AS EQ GI QV+ AI +MD+ TQQNAALVEE+AAA ++L EQA LA++V+V Sbjct: 549 IMAEIASASDEQSRGITQVSLAISEMDSTTQQNAALVEESAAAADSLAEQAILLAQAVAV 608 Query: 499 FRL 501 FRL Sbjct: 609 FRL 611