BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3890.p (213 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2253 [I] COG2057 Acyl CoA Rso Ralstonia solanacearum 355 3e-98 AGl642 [I] COG2057 Acyl CoA Atu Agrobacterium tumefaciens strain... 257 1e-68 BMEII0645 [I] COG2057 Acyl CoA Bme Brucella melitensis 255 5e-68 DRA0067 [I] COG2057 Acyl CoA Dra Deinococcus radiodurans 225 5e-59 RSc1571 [I] COG2057 Acyl CoA Rso Ralstonia solanacearum 215 5e-56 >RSc2253 [I] COG2057 Acyl CoA Rso Ralstonia solanacearum Length = 220 Score = 355 bits (912), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 171/212 (80%), Positives = 188/212 (88%) Query: 1 MNRFTREQIAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAP 60 + R+TR+QIAARVA+DIP+G+ VNLGIGLPT VAN LPAD+EI LHSENG+LGMGPAPAP Sbjct: 9 IQRWTRDQIAARVARDIPDGSVVNLGIGLPTLVANQLPADREILLHSENGLLGMGPAPAP 68 Query: 61 GEEDEDLINAGKQPVTLLTGGSYFHHADSFAMMRGGHLDICVLGAFQVSAKGDLANWHTG 120 G ED DLINAGKQPVT+ GG+YFHHADSFAMMRGGHLD CVLGAFQVSA GDLANWHTG Sbjct: 69 GAEDPDLINAGKQPVTIKPGGAYFHHADSFAMMRGGHLDYCVLGAFQVSAAGDLANWHTG 128 Query: 121 APDAIPAVGGAMDLAIGAKQVFVMMDHQTKTGESKLVEACSYPLTGIACVNRIYTDLAVI 180 APDAIPAVGGAMDLAIGAKQVFVMM+HQTK G+SK+V AC+YPLTGI CV+ IYTDLAVI Sbjct: 129 APDAIPAVGGAMDLAIGAKQVFVMMEHQTKQGDSKIVPACTYPLTGIGCVDTIYTDLAVI 188 Query: 181 DVTPQGLQVREIVEGLSFEELQKLTGAPLRPA 212 DVTP GL VRE+ +GL FE LQ LT PLR A Sbjct: 189 DVTPGGLIVREMADGLDFETLQTLTAVPLRRA 220 >AGl642 [I] COG2057 Acyl CoA Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 231 Score = 257 bits (657), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 123/208 (59%), Positives = 152/208 (73%), Gaps = 1/208 (0%) Query: 3 RFTREQIAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAPGE 62 + + QIA R AQDI +GAYVNLGIG P VA Y P ++ H+ENG+L G AP GE Sbjct: 12 KLSNAQIAWRAAQDIEDGAYVNLGIGFPEMVARYQPPGRQAIFHTENGILNFGEAPPEGE 71 Query: 63 EDEDLINAGKQPVTLLTGGSYFHHADSFAMMRGGHLDICVLGAFQVSAKGDLANWHTGAP 122 ED +LINAGK+ VTL G ++FHHADSFAM+RGGHLD+ +LGA+QV+ GDLANW G+ Sbjct: 72 EDWNLINAGKKAVTLKPGAAFFHHADSFAMVRGGHLDVAILGAYQVAQNGDLANWRVGS- 130 Query: 123 DAIPAVGGAMDLAIGAKQVFVMMDHQTKTGESKLVEACSYPLTGIACVNRIYTDLAVIDV 182 +PAVGGAMDL GAKQVFV+ +H TK GE KLVE C++PLTG+ C+ RIYT AVIDV Sbjct: 131 KGVPAVGGAMDLVHGAKQVFVITEHVTKNGEPKLVEKCAFPLTGVGCITRIYTSHAVIDV 190 Query: 183 TPQGLQVREIVEGLSFEELQKLTGAPLR 210 +RE + ++FEELQ +TGAPL Sbjct: 191 VDGRFVLREKLPAMTFEELQAMTGAPLH 218 >BMEII0645 [I] COG2057 Acyl CoA Bme Brucella melitensis Length = 229 Score = 255 bits (652), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 122/208 (58%), Positives = 151/208 (72%), Gaps = 1/208 (0%) Query: 3 RFTREQIAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAPGE 62 + + QIA R AQDI +GAYVNLGIG P VA Y P +E H+ENG+L G AP PGE Sbjct: 10 KLSNAQIAWRAAQDIADGAYVNLGIGFPEMVARYQPEGREAIFHTENGILDFGEAPPPGE 69 Query: 63 EDEDLINAGKQPVTLLTGGSYFHHADSFAMMRGGHLDICVLGAFQVSAKGDLANWHTGAP 122 ED DLINAGK+ VTL G ++FHHADSF+M+RGGHLD+ +LGA+QV+ GDLANW GA Sbjct: 70 EDWDLINAGKKAVTLKPGAAFFHHADSFSMVRGGHLDVAILGAYQVAQNGDLANWRVGA- 128 Query: 123 DAIPAVGGAMDLAIGAKQVFVMMDHQTKTGESKLVEACSYPLTGIACVNRIYTDLAVIDV 182 +PAVGGAMDL GAKQV V+ +H TK GE KLVE C++PLTG+ C+ RIYT AV+DV Sbjct: 129 KGVPAVGGAMDLVHGAKQVVVITEHVTKKGEPKLVEQCTFPLTGVKCITRIYTSHAVVDV 188 Query: 183 TPQGLQVREIVEGLSFEELQKLTGAPLR 210 + +RE + ++ EELQ +TGA L Sbjct: 189 SEGRFVLREKLAAMTLEELQAMTGAKLH 216 >DRA0067 [I] COG2057 Acyl CoA Dra Deinococcus radiodurans Length = 209 Score = 225 bits (574), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 110/204 (53%), Positives = 148/204 (72%), Gaps = 1/204 (0%) Query: 4 FTREQIAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAPGEE 63 +TR+++AAR AQ++ +G YVNLGIGLPT VAN++PA ++L SENG+LG+GP P E Sbjct: 3 WTRDEMAARAAQELQDGYYVNLGIGLPTLVANHIPAGMSVWLQSENGLLGIGPFPTEDEV 62 Query: 64 DEDLINAGKQPVTLLTGGSYFHHADSFAMMRGGHLDICVLGAFQVSAKGDLANWHTGAPD 123 D DLINAGKQ VT L G S+F ADSFAM+RGGH+++ +LGA QVS GDLANW Sbjct: 63 DPDLINAGKQTVTALPGASFFSSADSFAMIRGGHVNLAILGAMQVSETGDLANWMIPG-K 121 Query: 124 AIPAVGGAMDLAIGAKQVFVMMDHQTKTGESKLVEACSYPLTGIACVNRIYTDLAVIDVT 183 + +GGAMDL G ++V V+M+H K K++ C+ PLTG V+RI TDL V+DVT Sbjct: 122 MVKGMGGAMDLVAGVQRVVVLMEHVAKGDAHKILRECTLPLTGQGVVDRIITDLGVLDVT 181 Query: 184 PQGLQVREIVEGLSFEELQKLTGA 207 PQGL++ E+ G++ +EL++ TGA Sbjct: 182 PQGLKLVELAPGVTLDELRQKTGA 205 >RSc1571 [I] COG2057 Acyl CoA Rso Ralstonia solanacearum Length = 212 Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 108/210 (51%), Positives = 145/210 (69%), Gaps = 5/210 (2%) Query: 4 FTREQIAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAPGEE 63 +TR+++AAR A+++ +G YVNLGIGLPT VAN++P E++L SENG+LG+GP P E Sbjct: 3 WTRDEMAARAARELQDGFYVNLGIGLPTLVANHVPDGMEVWLQSENGLLGIGPFPTDDEV 62 Query: 64 DEDLINAGKQPVTLLTGGSYFHHADSFAMMRGGHLDICVLGAFQVSAKGDLANWHTGAPD 123 D D+INAGKQ VT L G S F ADSFAM+RGGH+++ +LGA Q+S GDLANW Sbjct: 63 DPDMINAGKQTVTTLPGSSIFSSADSFAMIRGGHINLAILGAMQISETGDLANWMIPGK- 121 Query: 124 AIPAVGGAMDLAIGAKQVFVMMDHQTKTGES----KLVEACSYPLTGIACVNRIYTDLAV 179 + +GGAMDL G K+V V+M+H K + K++ C+ PLTG+ V+RI TDL V Sbjct: 122 MVKGMGGAMDLVAGVKRVIVLMEHTAKKKDGSEDLKILPKCTLPLTGVGVVDRIITDLGV 181 Query: 180 IDVTPQGLQVREIVEGLSFEELQKLTGAPL 209 IDVT GL++ E G+S E++Q TG L Sbjct: 182 IDVTEHGLKLVEAAPGVSREDIQSKTGVNL 211