BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3885.p (233 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2245 [E] COG0410 ABC-type branched-chain amino acid transport... 345 5e-95 SMb20784 [E] COG0410 ABC-type branched-chain amino acid transpor... 222 5e-58 BMEII0628 [E] COG0410 ABC-type branched-chain amino acid transpo... 211 2e-54 AGl709 [E] COG0410 ABC-type branched-chain amino acid transport ... 207 1e-53 AGl1457 [E] COG0410 ABC-type branched-chain amino acid transport... 191 1e-48 >RSc2245 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 233 Score = 345 bits (885), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 169/233 (72%), Positives = 197/233 (84%) Query: 1 MPELLALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGS 60 M ELL+L++VTAGYG ++VL+DVSF + G SLALLGRNGVGKT+LL TLMG TR+HGG Sbjct: 1 MAELLSLERVTAGYGNAVVLDDVSFGLDAGGSLALLGRNGVGKTTLLATLMGFTRLHGGR 60 Query: 61 IRWRGGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKWDLKKIYEIFPR 120 IRWRG DI RVP H+RA AGLGWVPQER+MFPSL+VEEHLT V R G WD+ ++Y FPR Sbjct: 61 IRWRGADIARVPPHRRARAGLGWVPQERWMFPSLTVEEHLTAVARPGAWDVARVYRAFPR 120 Query: 121 LHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSD 180 L ERR N+GNQLSGGEQQM+AIARAL+ +P++LLLDEPMEGLAPIIVQEL + IR LV + Sbjct: 121 LEERRRNLGNQLSGGEQQMVAIARALVTNPALLLLDEPMEGLAPIIVQELGRAIRALVDE 180 Query: 181 EGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLADGEKLDRLVAVA 233 GM+VI+VEQHAR+AL LT+RA+VLDRGRIVHAS S LLAD L RLVAVA Sbjct: 181 GGMAVILVEQHARLALELTRRALVLDRGRIVHASASADLLADAPLLQRLVAVA 233 >SMb20784 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Sme Sinorhizobium meliloti Length = 238 Score = 222 bits (566), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 112/229 (48%), Positives = 160/229 (69%), Gaps = 1/229 (0%) Query: 5 LALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGSIRWR 64 L +D ++AGYG + VLE +SF + G LA+LGRNG+GKT+LL TL G TR + G IR Sbjct: 6 LEVDNLSAGYGPTRVLEGISFSVPAGARLAVLGRNGMGKTTLLATLAGQTRRYEGRIRIG 65 Query: 65 GGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERG-GKWDLKKIYEIFPRLHE 123 ++ +P+ RA GLG+VPQ R +FPSL+VEE+L V +G K L + YE+FPRL+E Sbjct: 66 DANVTALPSASRALKGLGFVPQARCVFPSLTVEENLFVGLKGRPKTALSEAYEMFPRLYE 125 Query: 124 RRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSDEGM 183 RR N+G+QLSGGEQQML+ AR+++ PS+LLLDEP+EGLAP+I +EL+K L GM Sbjct: 126 RRRNLGSQLSGGEQQMLSTARSILGRPSVLLLDEPLEGLAPVICEELMKAFAELAKTGGM 185 Query: 184 SVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLADGEKLDRLVAV 232 ++++VEQ + AL R I+L+RGR+ + ++L + ++RL+ V Sbjct: 186 TILLVEQRIQSALDFADRVIILERGRLAWSGTPEALAKEHATVERLLGV 234 >BMEII0628 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Bme Brucella melitensis Length = 238 Score = 211 bits (536), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 107/229 (46%), Positives = 154/229 (67%), Gaps = 1/229 (0%) Query: 5 LALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGSIRWR 64 L + ++GYG + V+EDVSF G LA+LGRNGVGKTSL T+ G TR +GG I Sbjct: 6 LEIRNFSSGYGPTRVIEDVSFKAEPGSRLAILGRNGVGKTSLFATIAGQTRRYGGEILLD 65 Query: 65 GGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTV-VERGGKWDLKKIYEIFPRLHE 123 G +I +P+ RA AGLG+VPQ R +FP+L+VEE+L V ++ K L++ Y +FPRL E Sbjct: 66 GRNIATLPSAARALAGLGYVPQTRDIFPTLTVEENLFVGLKNRPKDALEEAYAMFPRLKE 125 Query: 124 RRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSDEGM 183 RR N+G+QLSGGEQQML+ AR+++ P++LLLDEP+EGLAP+I +EL+ L M Sbjct: 126 RRRNLGSQLSGGEQQMLSTARSILGQPTVLLLDEPLEGLAPVICEELMAAFSALAQKGDM 185 Query: 184 SVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLADGEKLDRLVAV 232 ++++VEQ + AL I+L+RGRI + + L + + ++ L+ V Sbjct: 186 TILLVEQRIQSALDFADHVIILERGRIAWSGTAAELADNPQTVEELLGV 234 >AGl709 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 255 Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 105/224 (46%), Positives = 149/224 (66%), Gaps = 1/224 (0%) Query: 5 LALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGSIRWR 64 L + +TAGYG + V+E +S + G A+LGRNGVGKTSL TL G T+ G IR Sbjct: 23 LEIANLTAGYGPTRVIEGLSLSVPSGSRFAVLGRNGVGKTSLFATLAGQTKRFAGDIRIG 82 Query: 65 GGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTV-VERGGKWDLKKIYEIFPRLHE 123 G DI +P+ RA AGLG+VPQ R +FP+L+VEE+L V ++ K +++ Y +FPRL E Sbjct: 83 GQDIAALPSAARAKAGLGYVPQTRDVFPTLTVEENLFVGLKTRPKSAIEEAYTLFPRLKE 142 Query: 124 RRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSDEGM 183 RR N+G+QLSGGEQQML+ AR ++ P +LLLDEP+EGLAP+I +EL+ +L M Sbjct: 143 RRRNLGSQLSGGEQQMLSTARTILGQPRVLLLDEPLEGLAPVICEELMAAFSKLAKSGEM 202 Query: 184 SVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLADGEKLD 227 +++++EQ +MA+ AI+++RGRIV S L + +D Sbjct: 203 TILLIEQRIQMAIDFADHAIIMERGRIVWEGPSSELAENPGIID 246 >AGl1457 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 233 Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 108/235 (45%), Positives = 155/235 (65%), Gaps = 5/235 (2%) Query: 1 MPELLALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGS 60 M +L + + + YGES L V + EGE++ +LGRNGVGKT+ L T+MG+ R G Sbjct: 1 MAAMLEVSNLKSWYGESQALHGVDLTVGEGETITILGRNGVGKTTTLRTIMGIIRNRKGV 60 Query: 61 IRWRGGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHL---TVVERGGKWDLKKIYEI 117 I+ G D++ VP H+ A G+G+VP+ER +F +LSVEE+L VV GG L +IYE+ Sbjct: 61 IKLGGKDMMPVPLHRTAKYGIGFVPEERGIFATLSVEENLMLPPVVASGG-MTLDEIYEL 119 Query: 118 FPRLHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRL 177 FP LHERR + G +LSGGEQQMLA+AR L +LLLDEP EGLAP+IVQ + +V+++L Sbjct: 120 FPNLHERRTSPGTKLSGGEQQMLAMARILRTGVKVLLLDEPTEGLAPVIVQRIGEVLQKL 179 Query: 178 VSDEGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLADGEKLDRLVAV 232 S GM+V++VEQ+ R A + R ++D G++V L A +L++++ V Sbjct: 180 KS-RGMTVVLVEQNFRFASRIADRFYLMDHGQMVSNFPVGELSARMGELNKVLGV 233