BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3874.p         (205 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1495 [S] COG4339 Uncharacterized protein conserved in bacteria...   145   8e-35
all0539 [S] COG4339 Uncharacterized protein conserved in bacteri...   142   7e-34
mll0172 Non COG                                                       130   2e-30
mll5256 Non COG                                                        32   0.64 

>PA1495 [S] COG4339 Uncharacterized protein conserved in bacteria Pae
           Pseudomonas aeruginosa
          Length = 208

 Score =  145 bits (365), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 120/202 (59%), Gaps = 4/202 (1%)

Query: 3   LTHEQWQSTWRTLGLPCPDAQWFDAIIEHYSQPHRHYHTLQHLEECFEKWEELRAESHHP 62
           L  ++W + W+ LG   P A  FDA++  Y    RHYH+ +H+  C E ++  R  +  P
Sbjct: 4   LDRQRWDALWQRLG-GNPPADAFDALLAAYGGADRHYHSDRHILACLEHFDRWRQLARRP 62

Query: 63  GEVELALWFHDLIYDVRRHDNEERSAAQATTCLQEAG-ATEETARRVHALIMATRQHDAK 121
             VELALW HDL+YD +R DNE  SAA     L +AG A    A R   LIMAT      
Sbjct: 63  DLVELALWTHDLVYDTQRQDNEAASAASTERWLDQAGLAALRPALR--ELIMATCHQAPP 120

Query: 122 ADVDTTILVDVDLSILAAPAARFQEYERQIRAEYQYVPQPLFKQERKKILQAFLHRPRIF 181
            D D  ++VD+DL+ILAAPA  +  YE  +RAEY +VP+PLF+  R K+L+  L +P ++
Sbjct: 121 GDADAALVVDLDLAILAAPAPVYARYEADVRAEYAWVPEPLFRAGRGKLLRQLLEQPALY 180

Query: 182 NTDRFFQRYEQAARENIEQALQ 203
           + +   QR+E AAR N+  AL+
Sbjct: 181 HCEPLRQRWEAAARANLRGALE 202


>all0539 [S] COG4339 Uncharacterized protein conserved in bacteria Nos
           Nostoc sp. PCC 7120
          Length = 212

 Score =  142 bits (357), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 76/194 (39%), Positives = 112/194 (57%), Gaps = 2/194 (1%)

Query: 7   QWQSTWRTLGLPCPDA-QWFDAIIEHYSQPHRHYHTLQHLEECFEKWEELRAESHHPGEV 65
           QWQ T +  G+    A Q F  +I+ YS P RHYHTL+H+    +  + L   +     V
Sbjct: 11  QWQQTLQNFGVDKTSATQVFTHLIQAYSSPSRHYHTLKHISCVLQTIQTLGTYAQDLPGV 70

Query: 66  ELALWFHDLIYDVRRHDNEERSAAQATTCLQEAGATEETARRVHALIMATRQHDAKADVD 125
           ELA WFHD+IYD +  DNEE+S+  A   LQ  G       +V  LI++T+ H A  D+D
Sbjct: 71  ELAAWFHDVIYDTQAQDNEEKSSDYAGAALQSLGIPLSCITKVKRLILSTKHHQAD-DID 129

Query: 126 TTILVDVDLSILAAPAARFQEYERQIRAEYQYVPQPLFKQERKKILQAFLHRPRIFNTDR 185
           + +L+D DL+ILA     +QEY   IR EY +V +  + Q R ++L+ FL R RI+ T  
Sbjct: 130 SQVLLDADLAILATNRVDYQEYAHAIRQEYAWVSEIDYIQGRTRVLEKFLQRQRIYFTPL 189

Query: 186 FFQRYEQAARENIE 199
            ++  E++AR N++
Sbjct: 190 MYEVGEESARANLQ 203


>mll0172 Non COG
          Length = 203

 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 104/180 (57%), Gaps = 9/180 (5%)

Query: 32  YSQPHRHYHTLQHLEECFEKWEELRAESHHPGEVELALWFHDLIYDVRRHDNEERSAAQA 91
           Y    RHYH L H+E       + RA    P  VE A+WFHD IYD +  DNE RSAA A
Sbjct: 22  YRAEDRHYHNLAHIEAMLALAADHRALLSDPQAVEAAIWFHDAIYDSKAKDNEARSAALA 81

Query: 92  TTCLQEAGATE-ETARRVHALIMAT------RQHDAKADVDTTILVDVDLSILAAPAARF 144
              L  A  T+ E   R+ A+I+AT      R HD  A  D ++ +D+DLSIL A    F
Sbjct: 82  AQKL--ASRTDPERLDRIGAMILATATHQVPRFHDDAATRDASLFLDMDLSILGAAPHAF 139

Query: 145 QEYERQIRAEYQYVPQPLFKQERKKILQAFLHRPRIFNTDRFFQRYEQAARENIEQALQG 204
             YER +R EY +V +P+++  R  +L+ FL RPRIF+T+ F QR+E  AR N+ ++L+ 
Sbjct: 140 DAYERAVRREYGWVEEPMWRAGRGAVLKDFLARPRIFHTEEFRQRFEPQARLNMARSLEA 199


>mll5256 Non COG
          Length = 639

 Score = 32.3 bits (72), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 30  EHYSQPHRHYHTLQHLEECFEKWEELRAESHHPGEVELALWFHDL 74
           E  SQ H H H L +     + W E+R+ S+  G+  L L+F  L
Sbjct: 367 EVVSQGHGHLHELANGGRWLDLWREVRSASNTYGDSTLGLYFQFL 411